9 Oct
2007
9 Oct
'07
11:03 a.m.
When modeling GTP and metal ions into my protein, using a template with 2 metal ions and an ATP analog, the GTP atoms end up disconnected from each other and scattered around the active site, and one of the two metals is launched out of the protein. What can I do to fix this?
Thanks much, Jon
9 Oct
9 Oct
11:18 a.m.
Jonathan Winger wrote: > When modeling GTP and metal ions into my protein, using a template > with 2 metal ions and an ATP analog, the GTP atoms end up > disconnected from each other and scattered around the active site, > and one of the two metals is launched out of the protein. What can I > do to fix this?
What Modeller version are you using? What do your input scripts/PDB files/alignments look like?
Ben Webb, Modeller Caretaker
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