Jonathan Winger wrote: > When modeling GTP and metal ions into my protein, using a template > with 2 metal ions and an ATP analog, the GTP atoms end up > disconnected from each other and scattered around the active site, > and one of the two metals is launched out of the protein. What can I > do to fix this?
What Modeller version are you using? What do your input scripts/PDB files/alignments look like?
Ben Webb, Modeller Caretaker