Hello Experienced Modeller users,
I am wondering if anyone has seen the following error message and has any idea what I need to do to fix the problem.
I have seen this question asked before while searching the archives. It was asked previously in 2003 by Seth Goldenberg, but I do not see a response in the archives. Perhaps someone replied directly to this gentleman. I would certainly be very appreciative of any help you might provide. Error Message Follows.
Thanks,
Jeff Bush
TOP_________> 132 89 READ_TOPOLOGY FILE = TOPLIB
openf5__224_> Open 11 OLD SEQUENTIAL ${MODINSTALL7v7}/modlib//top_heav.lib
openf5__224_> Open 11 UNKNOWN SEQUENTIAL ${MODINSTALL7v7}/modlib/models.lib
TOP_________> 133 90 READ_PARAMETERS FILE = PARLIB
openf5__224_> Open 11 OLD SEQUENTIAL ${MODINSTALL7v7}/modlib//par.lib
Dynamically allocated memory at amattacns [B,kB,MB]: 6138979 5995.097 5.855
openf5__224_> Open 11 OLD SEQUENTIAL ${MODINSTALL7v7}/modlib//par.lib
rdparf__232_> parameters BONDS ANGLS DIHEDS IMPROPS MRFP MODE
227 561 661 112 0 0
TOP_________> 134 91 CALL ROUTINE = 'create_topology'
TOP_________> 135 106 GENERATE_TOPOLOGY ADD_SEQUENCE = OFF
act54___590E> No topology generated for sequence: Lk
Possibly because incorrect topology library is used.
recover____E> ERROR_STATUS >= STOP_ON_ERROR: 1 1
Jeff Bush wrote: > I am wondering if anyone has seen the following error message and has > any idea what I need to do to fix the problem. > > I have seen this question asked before while searching the archives. It > was asked previously in 2003 by Seth Goldenberg, but I do not see a > response in the archives. Perhaps someone replied directly to this > gentleman. I would certainly be very appreciative of any help you might > provide. Error Message Follows.
If this is for the same alignment you sent me earlier, it's because your sequence doesn't have an align code of 'Lk'. Your align code is actually AF421182; Lk is the corresponding PDB code (which doesn't make any sense for a sequence entry). See http://salilab.org/modeller/manual/node175.html
I recommend that you don't use Modeller 7v7, but rather the latest version, 8v1, as you'll get a more informative error message in this case.
Ben Webb, Modeller Caretaker
participants (2)
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Jeff Bush
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Modeller Caretaker