24 Sep
2007
24 Sep
'07
9:40 p.m.
After loop refinement, we get files with .IL and .BL extensions. Which one should be used as the final model out of these? And after refinement through modeler there are some bad contacts and disallowed regions. How can we assess the models accuracy?
25 Sep
25 Sep
8:45 a.m.
simran jeet wrote: > After loop refinement, we get files with .IL and .BL extensions. Which > one should be used as the final model out of these?
The .BL files; see http://salilab.org/modeller/9v2/manual/node410.html
> How > can we assess the model’s accuracy?
Use Modeller's DOPE or GA341 assessment methods.
Ben Webb, Modeller Caretaker
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