simran jeet wrote: > After loop refinement, we get files with .IL and .BL extensions. Which > one should be used as the final model out of these?
The .BL files; see http://salilab.org/modeller/9v2/manual/node410.html
> How > can we assess the model’s accuracy?
Use Modeller's DOPE or GA341 assessment methods.
Ben Webb, Modeller Caretaker