Dear all,
when i attempt to run modeller through chimera interface (local) it works, but when i attempt to run my own script i get:
Traceback (most recent call last): File "modeller.py", line 1, in <module> from modeller import * File "/home/harald/Desktop/Projectfiles/Repo/Input files/5xwp/modeller.py", line 3, in <module> env = environ() NameError: name 'environ' is not defined
The script i run is:
from modeller import *
env = environ()
aln = alignment(env) mdl = model(env, file='5xwp_all_4', model_segment=('FIRST:A','LAST:A')) aln.append_model(mdl, align_codes='5xwpA', atom_files='5xwp_all_4.pdb') aln.append(file='sequence.ali', align_codes='sequence') aln.align2d() aln.write(file='TvLDH-1bdmA.ali', alignment_format='PIR') aln.write(file='TvLDH-1bdmA.pap', alignment_format='PAP')
My installation was successful but something is wrong.
On 7/25/19 3:42 AM, Danilo Boskovic wrote: > when i attempt to run modeller through chimera interface (local) it > works, but when i attempt to run my own script i get: > > Traceback (most recent call last): > File "modeller.py", line 1, in <module> > from modeller import * > File "/home/harald/Desktop/Projectfiles/Repo/Input > files/5xwp/modeller.py", line 3, in <module> > env = environ() > NameError: name 'environ' is not defined
Don't call your script "modeller.py". If you do that, "import modeller" will import itself, not Modeller.
Ben Webb, Modeller Caretaker
participants (2)
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Danilo Boskovic -
Modeller Caretaker