Hi,
I'm trying to generate a model of an interleukine receptor complex using modweb. I have modelled separately 2 of the partners using modweb, and superimposed the models on the the template in pymol. However, modweb cannot find a reliable template of the last partner (which corresponds to a 4 hlx IL). I guess I can use the full ternary complex as a template, but don't see how this can be done within modweb. Any idea?
Thanks
James
James Fethiere wrote: > I'm trying to generate a model of an interleukine receptor complex using > modweb. I have modelled separately 2 of the partners using modweb, and > superimposed the models on the the template in pymol. However, modweb > cannot find a reliable template of the last partner (which corresponds > to a 4 hlx IL). I guess I can use the full ternary complex as a > template, but don't see how this can be done within modweb. Any idea?
To the best of my knowledge, there is no way to specify your own template with ModWeb - if you want to do this, you'd have to use Modeller directly.
Ben Webb, Modeller Caretaker
participants (2)
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James Fethiere
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Modeller Caretaker