Alignment format in fasta
25 Aug
2018
25 Aug
'18
9:52 a.m.
Can I get an alignment in fasta format between two proteins using modeller? Can I convert the pir or par format to fasta?
Regards.
27 Aug
27 Aug
10:42 a.m.
On 8/25/18 9:52 AM, Ahmad Khalifa wrote: > Can I get an alignment in fasta format between two proteins using > modeller? Can I convert the pir or par format to fasta?
Sure, alignment.write() can write out in FASTA format. See https://salilab.org/modeller/9.20/manual/node293.html for an example.
Ben Webb, Modeller Caretaker
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