10 Sep
2007
10 Sep
'07
8:40 a.m.
Which is the best strategy to assess the quality of a model and sort them out of a bunch of many calculated models?
I have models a complex of two proteins plus a metal ion.
Many Thanks edo
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Dr Edoardo Saccenti
CERM Magnetic Resonance Center
University of Florence
Fiorgen Foundation
Via Luigi Sacconi n° 6
50019 Sesto Fiorentino
(FI) Italy
Tel: +39 055 4574281
10 Sep
10 Sep
9:11 a.m.
saccenti@cerm.unifi.it wrote: > Which is the best strategy to assess the quality of a model and sort them > out of a bunch of many calculated models? > > I have models a complex of two proteins plus a metal ion.
Of the methods we have available in Modeller, DOPE is probably the most reliable - although as a statistical potential, it won't score your metal ion at all. See http://salilab.org/modeller/9v2/manual/node29.html for an example.
Ben Webb, Modeller Caretaker
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modeller-care@salilab.org http://www.salilab.org/modeller/
Modeller mail list: http://salilab.org/mailman/listinfo/modeller_usage
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