Hi Modellers,

I am pretty new using MODELLER. I met some problem with the tutorials. http://www.salilab.org/modeller/7v7/tutorial/basic.html I am using MODELLER 8v2. Thanks a lot if someone could tell me what might be wrong.

Here is the seq_search.top file: SET SEARCH_RANDOMIZATIONS = 100 SET FILE = 'TvLDH.ali' READ_SEQUENCE_DB SEQUENCE_SEARCH ALIGN_CODES = 'TvLDH', DATA_FILE = ON

Here is the seq_search.log file: --------- Kind, OS, HostName, Kernel, Processor: 4, Linux localhost.localdomain 2.6.9-22.ELsmp i686 Date and time of compilation : 02/28/2006 18:28:36 MODELLER executable type : i386-intel8 Job starting time (YY/MM/DD HH:MM:SS): 2006/03/21 11:52:24.775

SEQ_DATABASE_FILE : ${MODINSTALL8v2}/modlib//CHAINS_all.seq SEQ_DATABASE_FORMAT : PIR CHAINS_LIST : ${MODINSTALL8v2}/modlib//CHAINS_3.0_40_XN.cod CLEAN_SEQUENCES : T MINMAX_DB_SEQ_LEN : 0 999999 Number of sequences : 6869 Number of residues : 1543994 Length of longest sequence: 1491

sequenc_587E> Run alignment.append() or make alignment first. top_error__E> ERROR_STATUS >= STOP_ON_ERROR: 1 1

Dynamically allocated memory at finish [B,kB,MB]: 5317486 5192.857 5.071 Starting time : 2006/03/21 11:52:24.775 Closing time : 2006/03/21 12:35:30.209 Total CPU time [seconds] : 2585.59 ------------

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