Dear all,
I installed ModPipe and Modeller and would like to run a modelling job. I poceeded as discribed on the example page http://salilab.org/modpipe/doc/running.html#examples and the files provided in the command file (see attachment) all exist. Nevertheless I get the error:
/main/ModPipe.pl --conf_file modpipe.conf --sequence_id daa1d2be76c627b54186fcf8869f3a2dGSHMPTRF \ --hits_mode 1100
MPLib::MPModules::GetProfile__M> No profile found for sequence
MPLib::MPModules::GetProfile__M> Seqid : daa1d2be76c627b54186fcf8869f3a2dGSHMPTRF
MPLib::MPModules::GetProfile__M> Profile: /local_homes/nhomeyer/work/chopin_testing/PKS13/AcylCarrier_PDB/daa/daa1d2be76c627b54186fcf8869f3a2dGSHMPTRF/sequence/daa1d2be76c627b54186fcf8869f3a2dGSHMPTRF-uniprot90.prf
MPLib::MPModules::GetProfile__M> Will calculate a new profile
MPLib::MPModules::GetProfile__M> Calculating profile for sequence: daa1d2be76c627b54186fcf8869f3a2dGSHMPTRF
HDF5-DIAG: Error detected in HDF5 (1.8.14) thread 0:
#000: H5F.c line 604 in H5Fopen(): unable to open file
major: File accessibilty
minor: Unable to open file
#001: H5Fint.c line 1085 in H5F_open(): unable to read superblock
major: File accessibilty
minor: Read failed
#002: H5Fsuper.c line 277 in H5F_super_read(): file signature not found
major: File accessibilty
minor: Not an HDF5 file
Traceback (most recent call last):
File "/local_homes/nhomeyer/src/modpipe-2.2.0/src/int/BuildProfile.py", line 157, in <module>
main()
File "/local_homes/nhomeyer/src/modpipe-2.2.0/src/int/BuildProfile.py", line 153, in main
build_profile(env, sequence, database, opts)
File "/local_homes/nhomeyer/src/modpipe-2.2.0/src/int/BuildProfile.py", line 119, in build_profile
chains_list='ALL')
File "/local_homes/nhomeyer/src/modpipe-2.2.0/ext/mod/modlib/modeller/sequence_db.py", line 69, in read
minmax_db_seq_len)
_modeller.ModellerError: hdf5err____E> unable to open file
MPLib::MPModules::GetProfile__E> Failed to calculate a profile for sequence: daa1d2be76c627b54186fcf8869f3a2dGSHMPTRF
MPLib::MPModules::GetProfile__E> /local_homes/nhomeyer/src/modpipe-2.2.0/src/BuildProfile.py -o daa1d2be76c627b54186fcf8869f3a2dGSHMPTRF-uniprot90.prf -F FASTA -i 5 daa1d2be76c627b54186fcf8869f3a2dGSHMPTRF.fsa uniprot90
MPLib::MPModules::GetProfile__E> Results message:
256
ModPipe.pl__E> Failed to calculate BUILD_PROFILE profile
ModPipe.pl__E> Sequence: daa1d2be76c627b54186fcf8869f3a2dGSHMPTRF
Any suggestions how to solve this are welcome.
Kind regards,
Nadine
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