input atom files directory list (e.g., 'dir1:dir2:dir3:./:/')
ALIGN_CODES = <string:0>
'all'
codes of proteins in the alignment
Requirements:
[alignment]
Description:
This command outputs basic data about the proteins whose
atom filenames are specified by ATOM_FILES or ALIGN_CODES.
An alternative specification of the proteins to be described can be
provided by the alignment in memory; i.e., READ_ALIGNMENT
followed by DESCRIBE will describe all the proteins in the
alignment. This command is useful for preparation before comparative
modeling because it summarizes disulfides, cis-prolines, charges,
chain breaks, etc. When an alignment is given, results depending
only on the amino acid sequences are still written out even if some
atom files do not exist.
Example:
# Example for: DESCRIBE
# Describe the sequences and structures in the alignment.
READ_ALIGNMENT FILE = 'toxin.ali', ALIGN_CODES = '2ctx' '2abx'
DESCRIBE
