next up previous contents index
Next: Alignment file format Up: MODELLER commands Previous: MAKE_REGION define   Contents   Index


Comparison and searching of sequences and structures

This section describes the format of the alignment file and commands for reading, writing, making, analyzing and using the alignments of sequences and structures (pairwise and multiple). It also includes a description of the command for searching a sequence database. For the underlying dynamic programming methods see Section 5.1.





Subsections

Ben Webb 2004-10-04