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allhmodel() -- prepare to build all-hydrogen models

env = <environ>   MODELLER environment
alnfile = <str:1>   file containing template-sequence alignment
knowns = <str:0>   template codes in alignment
sequence = <str:1>   sequence code in alignment
deviation = <float:1>   control amount of randomization
library_schedule = <int:1>   optimization schedule
parlib = <str:1>   parameter library to use
csrfile = <str:1>   user-provided restraints file
inifile = <str:1>   user-provided initial model file
assess_methods = function(s)   assessment functions
Description:
This creates a new object for building all-hydrogen models. All of the arguments are the same as those for automodel().

See section 2.2.3 for an example.


next up previous contents index
Next: loopmodel reference Up: allhmodel reference Previous: allhmodel reference   Contents   Index
Ben Webb 2005-06-20