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`loopmodel` reference

The loopmodel class is derived from automodel, so all properties and commands of both the automodel and model classes are available in addition to those listed below.

Subsections

loopmodel() -- prepare to build models with loop refinement
loopmodel.loop.md_level -- control the loop model refinement level
loopmodel.loop.max_var_iterations -- select length of optimizations
loopmodel.loop.library_schedule -- select optimization schedule
loopmodel.loop.starting_model -- first loop model to build
loopmodel.loop.ending_model -- last loop model to build
loopmodel.loop.write_selection_only -- write PDBs containing only the loops
loopmodel.loop.write_defined_only -- only write non-loop atoms present in the input model
loopmodel.loop.outputs -- all output data for generated loop models
loopmodel.select_loop_atoms() -- select region for loop optimization
loopmodel.get_loop_model_filename() -- get the model PDB name
loopmodel.user_after_single_loop_model() -- analyze or refine each loop model
loopmodel.read_potential() -- read in the loop modeling potential
loopmodel.build_ini_loop() -- create the initial conformation of the loop

Automatic builds 2013-06-11

loopmodel reference

`loopmodel` reference