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What is MODELLER?
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MODELLER A Program for
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Acknowledgments
Contents
Index
Introduction
Subsections
What is M
ODELLER
?
M
ODELLER
bibliography
Distribution
Installation
Bug reports
Method for comparative protein structure modeling by M
ODELLER
Comparative protein modeling primer
Finding structures and sequences related to the target sequence
Preparing an initial family alignment of all structures and sequences
Becoming familiar with the family fold and improving the alignment
Selecting the templates
Model building
Evaluating the models
Repeat the cycle
Tutorial on using M
ODELLER
for comparative modeling
Preparing input files
Atom files
Alignment file
Script file
Running M
ODELLER
Fully automated comparative modeling
Improved modeling of loops in M
ODELLER
-6
Frequently asked questions (FAQ) and examples
M
ODELLER
updates
Major changes in Releases 5 and 6
Detailed chronological listing of some changes since M
ODELLER
-4 release on 17 June, 1997
Ben Webb 2004-04-20
