Patches: Difference between revisions
No edit summary |
No edit summary |
||
| Line 9: | Line 9: | ||
* [http://salilab.org/modeller/archive/patch-9v1/inter-het-rsr.patch inter-het-rsr.patch]: constrain HET-HET distances, e.g. to preserve DNA chains during modeling. | * [http://salilab.org/modeller/archive/patch-9v1/inter-het-rsr.patch inter-het-rsr.patch]: constrain HET-HET distances, e.g. to preserve DNA chains during modeling. | ||
* [http://salilab.org/modeller/archive/patch-9v1/top-commands.patch top-commands.patch]: fixes for correct functioning of the EXPAND_ALIGNMENT and SEGMENT_MATCHING TOP commands. | * [http://salilab.org/modeller/archive/patch-9v1/top-commands.patch top-commands.patch]: fixes for correct functioning of the EXPAND_ALIGNMENT and SEGMENT_MATCHING TOP commands. | ||
* [http://salilab.org/modeller/archive/patch-9v1/rna-model.patch rna-model.patch]: experimental support for RNA/DNA modeling. | |||
---- | ---- | ||
Patches for old versions: ["/8v2"] ["/8v1"] | Patches for old versions: ["/8v2"] ["/8v1"] | ||
Revision as of 00:26, 22 May 2007
Patches on this page can be applied to Modeller 9v1 to fix some minor problems. (Use the Unix `patch` command, or apply them by hand.)
(!) The patches are listed in chronological order (oldest first), so you should apply them in this order to avoid problems.
- atom_range.patch: correct a typo in the `model.atom_range()` method.
- inter-het-rsr.patch: constrain HET-HET distances, e.g. to preserve DNA chains during modeling.
- top-commands.patch: fixes for correct functioning of the EXPAND_ALIGNMENT and SEGMENT_MATCHING TOP commands.
- rna-model.patch: experimental support for RNA/DNA modeling.
Patches for old versions: ["/8v2"] ["/8v1"]