Patches/9v1

Patches on this page can be applied to Modeller 9v1 to fix some minor problems. (Use the Unix `patch` command, or apply them by hand.)

(!) The patches are listed in chronological order (oldest first), so you should apply them in this order to avoid problems.

• atom_range.patch: correct a typo in the `model.atom_range()` method.
• inter-het-rsr.patch: constrain HET-HET distances, e.g. to preserve DNA chains during modeling.
• top-commands.patch: fixes for correct functioning of the EXPAND_ALIGNMENT and SEGMENT_MATCHING TOP commands.
• rna-model.patch: experimental support for RNA/DNA modeling.
• superpose-templates.patch: work around a problem where superposed template coordinates (used for multi-template automodel runs) are forgotten.