Patches/9v1: Difference between revisions
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Patches on this page can be applied to Modeller 9v1 to fix some minor problems. (Use the Unix | Patches on this page can be applied to Modeller 9v1 to fix some minor problems. (Use the Unix <code>patch</code> command, or apply them by hand.) | ||
💡 The patches are listed in chronological order (oldest first), so you should apply them in this order to avoid problems. | |||
* [http://salilab.org/modeller/archive/patch-9v1/atom_range.patch atom_range.patch]: correct a typo in the | * [http://salilab.org/modeller/archive/patch-9v1/atom_range.patch atom_range.patch]: correct a typo in the <code>model.atom_range()</code> method. | ||
* [http://salilab.org/modeller/archive/patch-9v1/inter-het-rsr.patch inter-het-rsr.patch]: constrain HET-HET distances, e.g. to preserve DNA chains during modeling. | * [http://salilab.org/modeller/archive/patch-9v1/inter-het-rsr.patch inter-het-rsr.patch]: constrain HET-HET distances, e.g. to preserve DNA chains during modeling. | ||
* [http://salilab.org/modeller/archive/patch-9v1/top-commands.patch top-commands.patch]: fixes for correct functioning of the EXPAND_ALIGNMENT and SEGMENT_MATCHING TOP commands. | * [http://salilab.org/modeller/archive/patch-9v1/top-commands.patch top-commands.patch]: fixes for correct functioning of the EXPAND_ALIGNMENT and SEGMENT_MATCHING TOP commands. | ||
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* [http://salilab.org/modeller/archive/patch-9v1/superpose-templates.patch superpose-templates.patch]: work around a problem where superposed template coordinates (used for multi-template automodel runs) are forgotten. | * [http://salilab.org/modeller/archive/patch-9v1/superpose-templates.patch superpose-templates.patch]: work around a problem where superposed template coordinates (used for multi-template automodel runs) are forgotten. | ||
[[Category:Patches]] | |||
Latest revision as of 22:14, 16 August 2022
Patches on this page can be applied to Modeller 9v1 to fix some minor problems. (Use the Unix patch command, or apply them by hand.)
💡 The patches are listed in chronological order (oldest first), so you should apply them in this order to avoid problems.
- atom_range.patch: correct a typo in the
model.atom_range()method. - inter-het-rsr.patch: constrain HET-HET distances, e.g. to preserve DNA chains during modeling.
- top-commands.patch: fixes for correct functioning of the EXPAND_ALIGNMENT and SEGMENT_MATCHING TOP commands.
- rna-model.patch: experimental support for RNA/DNA modeling.
- superpose-templates.patch: work around a problem where superposed template coordinates (used for multi-template automodel runs) are forgotten.