Patches: Difference between revisions
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* [http://salilab.org/modeller/archive/patch-9v1/top-commands.patch top-commands.patch]: fixes for correct functioning of the EXPAND_ALIGNMENT and SEGMENT_MATCHING TOP commands. | * [http://salilab.org/modeller/archive/patch-9v1/top-commands.patch top-commands.patch]: fixes for correct functioning of the EXPAND_ALIGNMENT and SEGMENT_MATCHING TOP commands. | ||
* [http://salilab.org/modeller/archive/patch-9v1/rna-model.patch rna-model.patch]: experimental support for RNA/DNA modeling. | * [http://salilab.org/modeller/archive/patch-9v1/rna-model.patch rna-model.patch]: experimental support for RNA/DNA modeling. | ||
* [http://salilab.org/modeller/archive/patch-9v1/superpose-templates.patch superpose-templates.patch]: work around a problem where superposed template coordinates (used for multi-template automodel runs) are forgotten | |||
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Patches for old versions: ["/8v2"] ["/8v1"] | Patches for old versions: ["/8v2"] ["/8v1"] | ||
Revision as of 22:35, 11 July 2007
Patches on this page can be applied to Modeller 9v1 to fix some minor problems. (Use the Unix `patch` command, or apply them by hand.)
(!) The patches are listed in chronological order (oldest first), so you should apply them in this order to avoid problems.
- atom_range.patch: correct a typo in the `model.atom_range()` method.
- inter-het-rsr.patch: constrain HET-HET distances, e.g. to preserve DNA chains during modeling.
- top-commands.patch: fixes for correct functioning of the EXPAND_ALIGNMENT and SEGMENT_MATCHING TOP commands.
- rna-model.patch: experimental support for RNA/DNA modeling.
- superpose-templates.patch: work around a problem where superposed template coordinates (used for multi-template automodel runs) are forgotten
Patches for old versions: ["/8v2"] ["/8v1"]