Using non-standard parameter files: Difference between revisions

Revision as of 20:46, 10 February 2021

To use non-standard parameter files (restyp.lib, par.lib, top.lib) with the AutoModel class in Modeller 10.0:

You can specify a non-standard restyp.lib file when creating the Environ object. See the manual page.
To use non standard parameter and topology files, set the `toplib` and `parlib` members of the automodel object:

#!python
env = Environ(restyp_lib_file='myrestyp.lib')

a = AutoModel(env, ...)
a.toplib = 'mytop.lib'
a.parlib = 'mypar.lib'
a.make()

@@ Line 1: / Line 1: @@
 __NOTOC__
 <!-- ## page was renamed from Using_non-standard_parameter_files -->
-To use non-standard parameter files (restyp.lib, par.lib, top.lib) with the automodel class in Modeller 9v1:
+To use non-standard parameter files (restyp.lib, par.lib, top.lib) with the AutoModel class in Modeller 10.0:
-* You can specify a non-standard restyp.lib file when creating the environ object. See the [http://salilab.org/modeller/9v1/manual/node99.html manual page].
+* You can specify a non-standard restyp.lib file when creating the Environ object. See the [https://salilab.org/modeller/10.0/manual/node117.html manual page].
 * To use non standard parameter and topology files, set the `toplib` and `parlib` members of the automodel object:
 <pre><nowiki>#!python
-env = environ(restyp_lib_file='myrestyp.lib')
+env = Environ(restyp_lib_file='myrestyp.lib')
-a = automodel(env, ...)
+a = AutoModel(env, ...)
 a.toplib = 'mytop.lib'
 a.parlib = 'mypar.lib'