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This page contains example Python scripts for MODELLER. To submit your own examples, simply edit this page to add them. | |||
This page contains example | |||
(For large inputs, it may be easier to link to a .tar.gz or .zip file containing them. This Wiki does not allow you to upload such files, so in this case, email them to [[Modeller Caretaker]] to first have them added to the website.) | (For large inputs, it may be easier to link to a .tar.gz or .zip file containing them. This Wiki does not allow you to upload such files, so in this case, email them to [[Modeller Caretaker]] to first have them added to the website.) | ||
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== Examples == | == Examples == | ||
* ["Restraints on pseudo atoms"]: demonstrates the use of restraints between real and pseudo atoms. | * ["Restraints on pseudo atoms"]: demonstrates the use of restraints between real and pseudo atoms. | ||
* ["Mutate model"]: demonstrates the mutation and optimization of a single residue (SNP) | * ["Mutate model"]: demonstrates the mutation and optimization of a single residue (SNP). | ||
* ["Missing residues"]: demonstrates using Modeller to fill in missing residues. | * ["Missing residues"]: demonstrates using Modeller to fill in missing residues. | ||
* ["Rebuilding sequence databases"]: scripts to rebuild sequence databases from PDB. | * ["Rebuilding sequence databases"]: scripts to rebuild sequence databases from PDB. | ||
* ["Cyclic protein"]: demonstrates how to build a model of a cyclic protein. | * ["Cyclic protein"]: demonstrates how to build a model of a cyclic protein. | ||
* ["Cluster PDBS"]: make a clustered representative from a set of PDBs of the same sequence. | |||
Revision as of 00:00, 1 January 1970
This page contains example Python scripts for MODELLER. To submit your own examples, simply edit this page to add them.
(For large inputs, it may be easier to link to a .tar.gz or .zip file containing them. This Wiki does not allow you to upload such files, so in this case, email them to Modeller Caretaker to first have them added to the website.)
Examples
- ["Restraints on pseudo atoms"]: demonstrates the use of restraints between real and pseudo atoms.
- ["Mutate model"]: demonstrates the mutation and optimization of a single residue (SNP).
- ["Missing residues"]: demonstrates using Modeller to fill in missing residues.
- ["Rebuilding sequence databases"]: scripts to rebuild sequence databases from PDB.
- ["Cyclic protein"]: demonstrates how to build a model of a cyclic protein.
- ["Cluster PDBS"]: make a clustered representative from a set of PDBs of the same sequence.