(Add px/py/pz density patch.)
(Expose density.grid.shape.)
Line 8: Line 8:


* [http://salilab.org/modeller/archive/patch-9.13/density-origin.patch density-origin.patch]: Make the px, py and pz attributes of `density` objects visible to Python.
* [http://salilab.org/modeller/archive/patch-9.13/density-origin.patch density-origin.patch]: Make the px, py and pz attributes of `density` objects visible to Python.
* [http://salilab.org/modeller/archive/patch-9.13/density-shape.patch density-shape.patch]: Make the shape of `density` object grids visible to Python (as `d.grid.shape`).


----
----
Patches for old versions: [[/9.12]] [[/9.11]] [[/9.10]] [[/9.9]] [[/9v8]] [[/9v7]] [[/9v6]] [[/9v5]] [[/9v4]] [[/9v3]] [[/9v2]] [[/9v1]] [[/8v2]] [[/8v1]]
Patches for old versions: [[/9.12]] [[/9.11]] [[/9.10]] [[/9.9]] [[/9v8]] [[/9v7]] [[/9v6]] [[/9v5]] [[/9v4]] [[/9v3]] [[/9v2]] [[/9v1]] [[/8v2]] [[/8v1]]



Revision as of 17:00, 11 June 2014

  • SOAP support for Apple Mac: if you see an error like "`required filter 'deflate' is not registered`" when trying to use SOAP, get libhdf5.7.dylib and libhdf5_hl.7.dylib and put them in `/Library/modeller-9.13/lib/mac10v4/`, overwriting the original files there.

The patches below can be applied to Modeller 9.13 to fix some minor problems. (Use the Unix `patch` command, or apply them by hand.)

(!) The patches are listed in chronological order (oldest first), so you should apply them in this order to avoid problems.

  • density-origin.patch: Make the px, py and pz attributes of `density` objects visible to Python.
  • density-shape.patch: Make the shape of `density` object grids visible to Python (as `d.grid.shape`).

Patches for old versions: /9.12 /9.11 /9.10 /9.9 /9v8 /9v7 /9v6 /9v5 /9v4 /9v3 /9v2 /9v1 /8v2 /8v1