Re: [ModPipe-users] [modeller_usage] Fwd: Installation Issues

[Ben Webb <ben AT salilab.org>]

On 10/18/13 2:58 PM, Amjad Farooq wrote:
> Yes, ./lib/python/modpipe/version.py exists:

OK then, that means that for some reason your Python path is not being 
set properly. How *exactly* are you running the demo? If you look at 
main/AddSeqMP.py, you should see that it adds that lib/python 
subdirectory to the Python path. So either you're running a different 
AddSeqMP.py script, or it's not adding the path correctly for some reason.

> But, may be this would help: When I run a test, I get these errors:
...
> MissingBinaryError: ModPipe was not configured with CE

This one is surely self explanatory.

> "/alpha/share/software/bioinf/MODPIPE/modpipe220/tests/unit/test_make_chains.py",
> line 52, in test_make_one_file
>      self.assert_(filecmp.cmp(out, '../db/test-pdb.pir'))
> AssertionError: False is not True

You'd have to look at the file it produces (out I think is pdb-list.pir) 
and see what the difference is.

	Ben
--
ben AT salilab.org                      http://salilab.org/~ben/
"It is a capital mistake to theorize before one has data."
	- Sir Arthur Conan Doyle