Re: [ModPipe-users] ModPipe-users Digest, Vol 8, Issue 1

[jb ZHOU <zhoujb0920 AT gmail.com>]

Hello Ben,
Thank you very much for you help,I changed `pwd` to  "pwd" before,

Sincerely,
Zhoujb

2016-03-10 4:00 GMT+08:00 <modpipe-users-request AT salilab.org>:

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>    1.  Modpipe problem (jb ZHOU)
>    2. Re: Modpipe problem (Ben Webb)
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> ----------------------------------------------------------------------
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> Message: 1
> Date: Wed, 9 Mar 2016 09:42:10 +0800
> From: jb ZHOU <zhoujb0920 AT gmail.com>
> To: modpipe-users AT salilab.org
> Subject: [ModPipe-users]  Modpipe problem
> Message-ID:
>         <
> CACTggG+RgtqZPqb0-vvJLXxpDTw08AuGZYMzh0GB8CVVoes5qw AT mail.gmail.com>
> Content-Type: text/plain; charset="utf-8"
>
> Dear ModPipe community:
> I installed modpipe in our system,but when I run the example of modpipe,I
> get the following error,I don't know how to deal with it:
>
> $ ../main/ModPipe.pl --conf_file modpipe.conf --sequence_id
> 97e075794f588a59e8a0fb8a945814b1MLGIKIKP
> MPLib::MPModules::GetProfile__E> Sequence file not found:
>
> pwd/data/97e/97e075794f588a59e8a0fb8a945814b1MLGIKIKP/sequence/97e075794f588a59e8a0fb8a945814b1MLGIKIKP.fsa
> ModPipe.pl__E> Failed to calculate BUILD_PROFILE profile
> ModPipe.pl__E>    Sequence: 97e075794f588a59e8a0fb8a945814b1MLGIKIKP
>
> Thanks for your help,
> Zhoujb
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> ------------------------------
>
> Message: 2
> Date: Tue, 8 Mar 2016 22:09:57 -0800
> From: Ben Webb <ben AT salilab.org>
> To: Help and discussion for users of ModPipe
>         <modpipe-users AT salilab.org>
> Subject: Re: [ModPipe-users] Modpipe problem
> Message-ID: <56DFBE35.2080600 AT salilab.org>
> Content-Type: text/plain; charset=windows-1252; format=flowed
>
> On 3/8/16 5:42 PM, jb ZHOU wrote:
> > Dear ModPipe community:
> > I installed modpipe in our system,but when I run the example of
> > modpipe,I get the following error,I don't know how to deal with it:
> >
> > $ ../main/ModPipe.pl --conf_file modpipe.conf --sequence_id
> > 97e075794f588a59e8a0fb8a945814b1MLGIKIKP
> > MPLib::MPModules::GetProfile__E> Sequence file not found:
> >
> pwd/data/97e/97e075794f588a59e8a0fb8a945814b1MLGIKIKP/sequence/97e075794f588a59e8a0fb8a945814b1MLGIKIKP.fsa
>
> I'm pretty sure you shouldn't have a literal "pwd" here. Are you sure
> you didn't mean `pwd` (with backticks)? That's what is suggested in the
> documentation: http://salilab.org/modpipe/doc/running.html#examples
>
>         Ben
> --
> ben AT salilab.org                      https://salilab.org/~ben/
> "It is a capital mistake to theorize before one has data."
>         - Sir Arthur Conan Doyle
>
>
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> End of ModPipe-users Digest, Vol 8, Issue 1
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