Modeller_Usage Mailing List (by date)

Thread Index

[modeller_usage] Theory regarding filling of gaps 2008/02/01
- From: "Samuel Genheden (a03samge)" <>
Re: [modeller_usage] Theory regarding filling of gaps 2008/02/01
- From: Modeller Caretaker <>
[modeller_usage] Antibody Modelling 2008/02/04
- From: "" <>
[modeller_usage] Modeller 9v3 release 2008/02/05
- From: Modeller Caretaker <>
[modeller_usage] Question about alignment.align() 2008/02/05
- From: "Vadim Patsalo" <>
[modeller_usage] I'm a beginner 2008/02/11
- From: Lella Sana <>
Re: [modeller_usage] Antibody Modelling 2008/02/11
- From: Modeller Caretaker <>
Re: [modeller_usage] Question about alignment.align() 2008/02/11
- From: Modeller Caretaker <>
Re: [modeller_usage] I'm a beginner 2008/02/11
- From: Modeller Caretaker <>
[modeller_usage] Taking into account additional residues 2008/02/12
- From: valeria losasso <>
[modeller_usage] Taking into account additional residues 2008/02/12
- From: valeria losasso <>
Re: [modeller_usage] Taking into account additional residues 2008/02/13
- From: Modeller Caretaker <>
Re: [modeller_usage] Antibody Modelling 2008/02/13
- From: "" <>
Re: [modeller_usage] Antibody Modelling 2008/02/13
- From: "" <>
[modeller_usage] Strange results from loop modelling 2008/02/14
- From: "Samuel Genheden (a03samge)" <>
Re: [modeller_usage] Alignment editors? 2008/02/19
- From: James Procter <>
[modeller_usage] Some tutorial issues 2008/02/19
- From: Michael Mayhew <>
Re: [modeller_usage] Some tutorial issues 2008/02/19
- From: Modeller Caretaker <>
[modeller_usage] code to generate canonical alpha-helix from sequence 2008/02/24
- From: Yun He <>
Re: [modeller_usage] code to generate canonical alpha-helix from sequence 2008/02/24
- From: Modeller Caretaker <>
[modeller_usage] Using Fortran 90 with modeller 2008/02/25
- From: Lee, Jinwoo <>
[modeller_usage] fuse 3-residue peptide into a protein 2008/02/25
- From: Bingding Huang <>
Re: [modeller_usage] fuse 3-residue peptide into a protein 2008/02/25
- From: Modeller Caretaker <>
Re: [modeller_usage] Using Fortran 90 with modeller 2008/02/25
- From: Modeller Caretaker <>
[modeller_usage] Improper packing 2008/02/26
- From:
[modeller_usage] loop refinement with disulfide patch 2008/02/27
- From: "M. Seigneuret" <>
[modeller_usage] Need help on topology format convert (X-PLOR to CHARMM) 2008/02/27
- From: "sui x.g." <>
[modeller_usage] building loops in crystal structure 2008/02/28
- From: "Simpson, Lisa M" <>
[modeller_usage] Modelling complexes 2008/02/28
- From: "Chido Mpamhanga" <>
[modeller_usage] Using only partial information for the model 2008/02/28
- From: Stéphane Téletchéa <>
Re: [modeller_usage] building loops in crystal structure 2008/02/28
- From: Modeller Caretaker <>
Re: [modeller_usage] Modelling complexes 2008/02/28
- From: Modeller Caretaker <>
Re: [modeller_usage] Using only partial information for the model 2008/02/28
- From: Modeller Caretaker <>
Re: [modeller_usage] Need help on topology format convert (X-PLOR to CHARMM) 2008/02/28
- From: Modeller Caretaker <>
Re: [modeller_usage] loop refinement with disulfide patch 2008/02/28
- From: Modeller Caretaker <>
[modeller_usage] parallel modeller 2008/02/28
- From: Starr Hazard <>
Re: [modeller_usage] parallel modeller 2008/02/28
- From: Modeller Caretaker <>
[modeller_usage] Modelling complexes 2008/02/29
- From: "Chido Mpamhanga" <>
Re: [modeller_usage] loop refinement with disulfide patch 2008/02/29
- From: "M. Seigneuret" <>
Re: [modeller_usage] loop refinement with disulfide patch 2008/02/29
- From: Modeller Caretaker <>
[modeller_usage] problem of strand/sheet 2008/03/02
- From: model model <>
[modeller_usage] [Fwd: Modeller Objective Function] 2008/03/04
- From: Modeller Caretaker <>
Re: [modeller_usage] problem of strand/sheet 2008/03/04
- From: Modeller Caretaker <>
Re: [modeller_usage] [Fwd: Modeller Objective Function] 2008/03/04
- From: Modeller Caretaker <>
[modeller_usage] Modelling extra residues, not present in template 2008/03/15
- From: Hanudatta Atreya <>
Re: [modeller_usage] Modelling extra residues, not present in template 2008/03/15
- From: Modeller Caretaker <>
[modeller_usage] long loops modeling 2008/03/16
- From: "Ivan Anishchenko" <>
[modeller_usage] Error when using dope_loopmodel 2008/03/17
- From: Florian Odronitz <>
Re: [modeller_usage] Error when using dope_loopmodel 2008/03/17
- From: Modeller Caretaker <>
Re: [modeller_usage] long loops modeling 2008/03/17
- From: Modeller Caretaker <>
[modeller_usage] DOPE profile of target structure 2008/03/17
- From: Hanudatta Atreya <>
Re: [modeller_usage] DOPE profile of target structure 2008/03/19
- From: Modeller Caretaker <>
[modeller_usage] What are the considerations to model a cytosol protein using nuclear protein. 2008/03/20
- From: Saravanan <>
[modeller_usage] symmetry and molecular dynamics 2008/03/28
- From: "JEAN WATERMEYER" <>
Re: [modeller_usage] symmetry and molecular dynamics 2008/03/28
- From: Modeller Caretaker <>
[modeller_usage] MODELLER and USER FORMAT restraints 2008/03/29
- From: "Yingang Feng" <>
Re: [modeller_usage] MODELLER and USER FORMAT restraints 2008/03/29
- From: Modeller Caretaker <>
[modeller_usage] inducing kink in a helix 2008/04/01
- From: Marta Rossini <>
[modeller_usage] FW: inducing kink in a helix 2008/04/01
- From: Marta Rossini <>
Re: [modeller_usage] inducing kink in a helix 2008/04/01
- From: Modeller Caretaker <>
[modeller_usage] Help 2008/04/04
- From:
Re: [modeller_usage] Help 2008/04/04
- From: Modeller Caretaker <>
[modeller_usage] Help 2008/04/04
- From:
Re: [modeller_usage] Help 2008/04/06
- From: Modeller Caretaker <>
[modeller_usage] ALIGN_CODE 2008/04/07
- From:
Re: [modeller_usage] modeller_usage Digest, Vol 7, Issue 19 2008/04/07
- From: "Vadim Patsalo" <>
Re: [modeller_usage] ALIGN_CODE 2008/04/07
- From: Modeller Caretaker <>
[modeller_usage] modelling multiple sequences in one go 2008/04/07
- From: "navkaranj" <>
[modeller_usage] running separate files from different folders 2008/04/07
- From: "navkaranj" <>
[modeller_usage] Help <Traceback> 2008/04/08
- From:
[modeller_usage] Regarding DOPE model assessment values (Mohan) 2008/04/08
- From:
[modeller_usage] Trouble running superpose on subsets of multichain pdbs 2008/04/08
- From: "Jake Gunn-Glanville" <>
Re: [modeller_usage] Regarding DOPE model assessment values (Mohan) 2008/04/08
- From: Modeller Caretaker <>
Re: [modeller_usage] modeller_usage Digest, Vol 7, Issue 21 2008/04/08
- From: "Vadim Patsalo" <>
Re: [modeller_usage] modelling multiple sequences in one go 2008/04/08
- From: Modeller Caretaker <>
Re: [modeller_usage] Help <Traceback> 2008/04/08
- From: Modeller Caretaker <>
Re: [modeller_usage] modeller_usage Digest, Vol 7, Issue 21 2008/04/08
- From: Modeller Caretaker <>
Re: [modeller_usage] Trouble running superpose on subsets of multichain pdbs 2008/04/08
- From: Modeller Caretaker <>
[modeller_usage] Help <exec prefix> 2008/04/09
- From:
Re: [modeller_usage] Help <exec prefix> 2008/04/09
- From: "Schmid, Dr R." <>
[modeller_usage] (no subject) 2008/04/11
- From: eashwar annipindi <>
[modeller_usage] secondary structure restraints 2008/04/18
- From: Marta Rossini <>
[modeller_usage] superposition based on a subset of aligned residues 2008/04/18
- From: "Jake Gunn-Glanville" <>
[modeller_usage] Error message: attempting superposition based on a subset of positions 2008/04/18
- From: "Jake Gunn-Glanville" <>
Re: [modeller_usage] Error message: attempting superposition based on a subset of positions 2008/04/18
- From: "Jake Gunn-Glanville" <>
[modeller_usage] Hang/crash on clustering 2008/04/27
- From: "James Irving" <>
Re: [modeller_usage] Hang/crash on clustering 2008/04/27
- From: Modeller Caretaker <>
[modeller_usage] help at first script 2008/05/05
- From:
Re: [modeller_usage] help at first script 2008/05/05
- From: Modeller Caretaker <>
Re: [modeller_usage] Error when using dope_loopmodel 2008/05/07
- From: Yun He <>
[modeller_usage] Loop Models 2008/05/07
- From: "Gilles Truan" <>
Re: [modeller_usage] Loop Models 2008/05/07
- From: Modeller Caretaker <>
[modeller_usage] Successful aplications of Modeller in docking studies 2008/05/07
- From: Lucas Bleicher <>
[modeller_usage] help at second script 2008/05/08
- From:
Re: [modeller_usage] help at second script 2008/05/08
- From: Modeller Caretaker <>
[modeller_usage] one question,please answer 2008/05/12
- From: "Maryam Nikoosaleh" <>
[modeller_usage] one question,please answer 2008/05/12
- From: "Maryam Nikoosaleh" <>
Re: [modeller_usage] one question,please answer 2008/05/12
- From: "James Irving" <>
[modeller_usage] EM density maps for building models? 2008/05/13
- From: Juan Chang <>
Re: [modeller_usage] EM density maps for building models? 2008/05/13
- From: Modeller Caretaker <>
[modeller_usage] Modeller 9v4 release 2008/05/15
- From: Modeller Caretaker <>
[modeller_usage] multiple template model 2008/05/21
- From: "deepti nayar" <>
Re: [modeller_usage] multiple template model 2008/05/22
- From: Modeller Caretaker <>
Re: [modeller_usage] modeller_usage Digest, Vol 7, Issue 30 2008/05/22
- From: "salam pradeep" <>
Re: [modeller_usage] modeller_usage Digest, Vol 7, Issue 30 2008/05/22
- From: Modeller Caretaker <>
[modeller_usage] PDB gap fill 2008/05/23
- From: Anna Marabotti <>
Re: [modeller_usage] PDB gap fill 2008/05/23
- From: Modeller Caretaker <>
[modeller_usage] one question,please answer 2008/05/27
- From: "Maryam Nikoosaleh" <>
[modeller_usage] Searching the PDB for sequence with structure 2008/05/28
- From: Florian Odronitz <>
[modeller_usage] how add sidechains 2008/05/28
- From:
Re: [modeller_usage] Searching the PDB for sequence with structure 2008/05/28
- From: Florian Odronitz <>
Re: [modeller_usage] Searching the PDB for sequence with structure 2008/05/28
- From: Jacob Glanville <>
Re: [modeller_usage] Searching the PDB for sequence with structure 2008/05/28
- From: Mensur Dlakic <>
Re: [modeller_usage] how add sidechains 2008/05/28
- From: Mensur Dlakic <>
Re: [modeller_usage] how add sidechains 2008/05/28
- From: Modeller Caretaker <>
Re: [modeller_usage] Searching the PDB for sequence with structure 2008/05/28
- From: Modeller Caretaker <>
[modeller_usage] Post - problem with modelling a chain using another chain as template 2008/05/29
- From:
Re: [modeller_usage] Post - problem with modelling a chain using another chain as template 2008/05/29
- From: Modeller Caretaker <>
[modeller_usage] multiple templates 2008/05/30
- From: Petr Danecek <>
Re: [modeller_usage] multiple templates 2008/05/30
- From: Modeller Caretaker <>
[modeller_usage] PIR format clarification 2008/06/01
- From: "Thomas Juettemann" <>
Re: [modeller_usage] PIR format clarification 2008/06/01
- From: Modeller Caretaker <>
Re: [modeller_usage] PIR format clarification 2008/06/01
- From: "Thomas Juettemann" <>
[modeller_usage] Problem with running Flex-em 2008/06/13
- From: "Hua Li" <>
Re: [modeller_usage] Problem with running Flex-em 2008/06/13
- From: Modeller Caretaker <>
[modeller_usage] Parallel job 2008/06/17
- From: Francesco Musiani <>
Re: [modeller_usage] Parallel job 2008/06/17
- From: Modeller Caretaker <>
[modeller_usage] Parallel job (part 2) 2008/06/17
- From: "Francesco Musiani" <>
Re: [modeller_usage] Parallel job (part 2) 2008/06/17
- From: Modeller Caretaker <>
[modeller_usage] question about mutate_model 2008/06/30
- From: Anna Marabotti <>
Re: [modeller_usage] question about mutate_model 2008/06/30
- From: Modeller Caretaker <>
[modeller_usage] restraint check 2008/07/01
- From: Ryan <>
[modeller_usage] non-proline cis-peptide bonds 2008/07/01
- From: François Sampieri <>
Re: [modeller_usage] non-proline cis-peptide bonds 2008/07/01
- From: Modeller Caretaker <>
Re: [modeller_usage] restraint check 2008/07/01
- From: Modeller Caretaker <>
[modeller_usage] GA341 assessment 2008/07/02
- From: Lella Sana <>
Re: [modeller_usage] GA341 assessment 2008/07/02
- From: Modeller Caretaker <>
[modeller_usage] symmetric hexamer 2008/07/16
- From:
[modeller_usage] naming chains in pdb 2008/07/16
- From: "Abdul Hameed, MohamedDiwanMo" <>
Re: [modeller_usage] symmetric hexamer 2008/07/16
- From: Modeller Caretaker <>
Re: [modeller_usage] naming chains in pdb 2008/07/16
- From: Modeller Caretaker <>
[modeller_usage] a question on MODELLER usage 2008/07/17
- From: "Ivan Anishchenko" <>
Re: [modeller_usage] a question on MODELLER usage 2008/07/17
- From: Modeller Caretaker <>

Mail converted by MHonArc

Archives by year
[ 1998 ] [ 1999 ] [ 2000 ] [ 2001 ] [ 2002 ] [ 2003 ] [ 2004 ] [ 2005 ] [ 2006 ] [ 2007 ] [ 2008 ]