Modeller_Usage Mailing List (by thread)

• Date Index

• [modeller_usage] Theory regarding filling of gaps, Samuel Genheden (a03samge)
  • Re: [modeller_usage] Theory regarding filling of gaps, Modeller Caretaker
• [modeller_usage] Antibody Modelling,
  • Re: [modeller_usage] Antibody Modelling, Modeller Caretaker
    • Re: [modeller_usage] Antibody Modelling,
  • Re: [modeller_usage] Antibody Modelling,
• [modeller_usage] Modeller 9v3 release, Modeller Caretaker
• [modeller_usage] Question about alignment.align(), Vadim Patsalo
  • Re: [modeller_usage] Question about alignment.align(), Modeller Caretaker
• [modeller_usage] I'm a beginner, Lella Sana
  • Re: [modeller_usage] I'm a beginner, Modeller Caretaker
• [modeller_usage] Taking into account additional residues, valeria losasso
  • <Possible follow-ups>
  • [modeller_usage] Taking into account additional residues, valeria losasso
    • Re: [modeller_usage] Taking into account additional residues, Modeller Caretaker
• [modeller_usage] Strange results from loop modelling, Samuel Genheden (a03samge)
• Re: [modeller_usage] Alignment editors?, James Procter
• [modeller_usage] Some tutorial issues, Michael Mayhew
  • Re: [modeller_usage] Some tutorial issues, Modeller Caretaker
• [modeller_usage] code to generate canonical alpha-helix from sequence, Yun He
  • Re: [modeller_usage] code to generate canonical alpha-helix from sequence, Modeller Caretaker
• [modeller_usage] Using Fortran 90 with modeller, Lee, Jinwoo
  • Re: [modeller_usage] Using Fortran 90 with modeller, Modeller Caretaker
• [modeller_usage] fuse 3-residue peptide into a protein, Bingding Huang
  • Re: [modeller_usage] fuse 3-residue peptide into a protein, Modeller Caretaker
• [modeller_usage] Improper packing, jit
• [modeller_usage] loop refinement with disulfide patch, M. Seigneuret
  • Re: [modeller_usage] loop refinement with disulfide patch, Modeller Caretaker
    • Re: [modeller_usage] loop refinement with disulfide patch, M. Seigneuret
      • Re: [modeller_usage] loop refinement with disulfide patch, Modeller Caretaker
• [modeller_usage] Need help on topology format convert (X-PLOR to CHARMM), sui x.g.
  • Re: [modeller_usage] Need help on topology format convert (X-PLOR to CHARMM), Modeller Caretaker
• [modeller_usage] building loops in crystal structure, Simpson, Lisa M
  • Re: [modeller_usage] building loops in crystal structure, Modeller Caretaker
• [modeller_usage] Modelling complexes, Chido Mpamhanga
  • Re: [modeller_usage] Modelling complexes, Modeller Caretaker
  • <Possible follow-ups>
  • [modeller_usage] Modelling complexes, Chido Mpamhanga
• [modeller_usage] Using only partial information for the model, Stéphane Téletchéa
  • Re: [modeller_usage] Using only partial information for the model, Modeller Caretaker
• [modeller_usage] parallel modeller, Starr Hazard
  • Re: [modeller_usage] parallel modeller, Modeller Caretaker
• [modeller_usage] problem of strand/sheet, model model
  • Re: [modeller_usage] problem of strand/sheet, Modeller Caretaker
• [modeller_usage] [Fwd: Modeller Objective Function], Modeller Caretaker
  • Re: [modeller_usage] [Fwd: Modeller Objective Function], Modeller Caretaker
• [modeller_usage] Modelling extra residues, not present in template, Hanudatta Atreya
  • Re: [modeller_usage] Modelling extra residues, not present in template, Modeller Caretaker
• [modeller_usage] long loops modeling, Ivan Anishchenko
  • Re: [modeller_usage] long loops modeling, Modeller Caretaker
• [modeller_usage] Error when using dope_loopmodel, Florian Odronitz
  • Re: [modeller_usage] Error when using dope_loopmodel, Modeller Caretaker
    • Re: [modeller_usage] Error when using dope_loopmodel, Yun He
• [modeller_usage] DOPE profile of target structure, Hanudatta Atreya
  • Re: [modeller_usage] DOPE profile of target structure, Modeller Caretaker
• [modeller_usage] What are the considerations to model a cytosol protein using nuclear protein., Saravanan
• [modeller_usage] symmetry and molecular dynamics, JEAN WATERMEYER
  • Re: [modeller_usage] symmetry and molecular dynamics, Modeller Caretaker
• [modeller_usage] MODELLER and USER FORMAT restraints, Yingang Feng
  • Re: [modeller_usage] MODELLER and USER FORMAT restraints, Modeller Caretaker
• [modeller_usage] inducing kink in a helix, Marta Rossini
  • Re: [modeller_usage] inducing kink in a helix, Modeller Caretaker
• [modeller_usage] FW: inducing kink in a helix, Marta Rossini
• [modeller_usage] Help, matziast
  • Re: [modeller_usage] Help, Modeller Caretaker
  • <Possible follow-ups>
  • [modeller_usage] Help, matziast
    • Re: [modeller_usage] Help, Modeller Caretaker
• [modeller_usage] ALIGN_CODE, barwellj
  • Re: [modeller_usage] ALIGN_CODE, Modeller Caretaker
• Re: [modeller_usage] modeller_usage Digest, Vol 7, Issue 19, Vadim Patsalo
• [modeller_usage] modelling multiple sequences in one go, navkaranj
  • Re: [modeller_usage] modelling multiple sequences in one go, Modeller Caretaker
• [modeller_usage] running separate files from different folders, navkaranj
• [modeller_usage] Help <Traceback>, matziast
  • Re: [modeller_usage] Help <Traceback>, Modeller Caretaker
• [modeller_usage] Regarding DOPE model assessment values (Mohan), m . b . rajasekaran
  • Re: [modeller_usage] Regarding DOPE model assessment values (Mohan), Modeller Caretaker
• [modeller_usage] Trouble running superpose on subsets of multichain pdbs, Jake Gunn-Glanville
  • Re: [modeller_usage] Trouble running superpose on subsets of multichain pdbs, Modeller Caretaker
• Re: [modeller_usage] modeller_usage Digest, Vol 7, Issue 21, Vadim Patsalo
  • Re: [modeller_usage] modeller_usage Digest, Vol 7, Issue 21, Modeller Caretaker
• [modeller_usage] Help <exec prefix>, matziast
  • Re: [modeller_usage] Help <exec prefix>, Schmid, Dr R.
• [modeller_usage] (no subject), eashwar annipindi
• [modeller_usage] secondary structure restraints, Marta Rossini
• [modeller_usage] superposition based on a subset of aligned residues, Jake Gunn-Glanville
• [modeller_usage] Error message: attempting superposition based on a subset of positions, Jake Gunn-Glanville
  • Re: [modeller_usage] Error message: attempting superposition based on a subset of positions, Jake Gunn-Glanville
• [modeller_usage] Hang/crash on clustering, James Irving
  • Re: [modeller_usage] Hang/crash on clustering, Modeller Caretaker
• [modeller_usage] help at first script, matziast
  • Re: [modeller_usage] help at first script, Modeller Caretaker
• [modeller_usage] Loop Models, Gilles Truan
  • Re: [modeller_usage] Loop Models, Modeller Caretaker
  • [modeller_usage] Successful aplications of Modeller in docking studies, Lucas Bleicher
• [modeller_usage] help at second script, matziast
  • Re: [modeller_usage] help at second script, Modeller Caretaker
• [modeller_usage] one question,please answer, Maryam Nikoosaleh
  • Re: [modeller_usage] one question,please answer, James Irving
  • <Possible follow-ups>
  • [modeller_usage] one question,please answer, Maryam Nikoosaleh
  • [modeller_usage] one question,please answer, Maryam Nikoosaleh
• [modeller_usage] EM density maps for building models?, Juan Chang
  • Re: [modeller_usage] EM density maps for building models?, Modeller Caretaker
• [modeller_usage] Modeller 9v4 release, Modeller Caretaker
• [modeller_usage] multiple template model, deepti nayar
  • Re: [modeller_usage] multiple template model, Modeller Caretaker
• Re: [modeller_usage] modeller_usage Digest, Vol 7, Issue 30, salam pradeep
  • Re: [modeller_usage] modeller_usage Digest, Vol 7, Issue 30, Modeller Caretaker
• [modeller_usage] PDB gap fill, Anna Marabotti
  • Re: [modeller_usage] PDB gap fill, Modeller Caretaker
• [modeller_usage] Searching the PDB for sequence with structure, Florian Odronitz
  • Re: [modeller_usage] Searching the PDB for sequence with structure, Mensur Dlakic
  • Re: [modeller_usage] Searching the PDB for sequence with structure, Modeller Caretaker
  • <Possible follow-ups>
  • Re: [modeller_usage] Searching the PDB for sequence with structure, Florian Odronitz
    • Re: [modeller_usage] Searching the PDB for sequence with structure, Jacob Glanville
• [modeller_usage] how add sidechains, matziast
  • Re: [modeller_usage] how add sidechains, Mensur Dlakic
  • Re: [modeller_usage] how add sidechains, Modeller Caretaker
• [modeller_usage] Post - problem with modelling a chain using another chain as template, plmallip
  • Re: [modeller_usage] Post - problem with modelling a chain using another chain as template, Modeller Caretaker
• [modeller_usage] multiple templates, Petr Danecek
  • Re: [modeller_usage] multiple templates, Modeller Caretaker
• [modeller_usage] PIR format clarification, Thomas Juettemann
  • Re: [modeller_usage] PIR format clarification, Modeller Caretaker
    • Re: [modeller_usage] PIR format clarification, Thomas Juettemann
• [modeller_usage] Problem with running Flex-em, Hua Li
  • Re: [modeller_usage] Problem with running Flex-em, Modeller Caretaker
• [modeller_usage] Parallel job, Francesco Musiani
  • Re: [modeller_usage] Parallel job, Modeller Caretaker
• [modeller_usage] Parallel job (part 2), Francesco Musiani
  • Re: [modeller_usage] Parallel job (part 2), Modeller Caretaker
• [modeller_usage] question about mutate_model, Anna Marabotti
  • Re: [modeller_usage] question about mutate_model, Modeller Caretaker
• [modeller_usage] restraint check, Ryan
  • Re: [modeller_usage] restraint check, Modeller Caretaker
• [modeller_usage] non-proline cis-peptide bonds, François Sampieri
  • Re: [modeller_usage] non-proline cis-peptide bonds, Modeller Caretaker
• [modeller_usage] GA341 assessment, Lella Sana
  • Re: [modeller_usage] GA341 assessment, Modeller Caretaker
• [modeller_usage] symmetric hexamer, o . h . weiergraeber
  • [modeller_usage] naming chains in pdb, Abdul Hameed, MohamedDiwanMo
    • Re: [modeller_usage] naming chains in pdb, Modeller Caretaker
  • Re: [modeller_usage] symmetric hexamer, Modeller Caretaker
• [modeller_usage] a question on MODELLER usage, Ivan Anishchenko
  • Re: [modeller_usage] a question on MODELLER usage, Modeller Caretaker