Patches on this page can be applied to Modeller 9v2 to fix some minor problems. (Use the Unix patch command, or apply them by hand.)
The patches are listed in chronological order (oldest first), so you should apply them in this order to avoid problems.
initial_malign3d.patch: make the INITIAL_MALIGN3D option work again with TOP scripts.
loop_output.patch: set OUTPUT correctly so that TOP loop modeling scripts work.
