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hydrogens in output structure

Dear Modeller users:
Is there any way how to generate homology model with hydrogen
atoms included in the output structure. we tried using the template 
structure with hydrogens and 'SET HYDROGEN_IO = on' in the top
file, but the output structure was again without hydrogens.

Thank you very much for your advice.
Best regards,
                  Jiri  

* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * 

       Dr. Jiri Damborsky
       Laboratory of Biomolecular 
       Structure & Dynamics
       Masaryk University
       Kotlarska 2
       611 37 Brno
       Czech Republic

       e-mail: 
       phone:  +420-5-41129 377
       FAX:    +420-5-41129 506
       http://www.chemi.muni.cz/~jiri