if still a problem, would you please try it with the pre-release of modeller
6 (ask ). if still a problem, would you please email
us the input files.
thanks, andrej
-----Original Message-----
From:
[]On">mailto:]On Behalf Of Azat
Badretdinov
Sent: Wednesday, November 14, 2001 9:56 AM
To: Tsu-Sheng Wang
Cc:
Subject: Re: Crash in running the SEQUENCE_SRCH
At 03:38 PM 11/14/01 +0800, Tsu-Sheng Wang wrote:
>Dears:
>
> When I run below program, it will be crash.
>
>INCLUDE
>SET OUTPUT_CONTROL = 1 1 1 1 1
>SET ATOM_FILES_DIRECTORY = '/usr/local/lib/pdb'
>SET OUTPUT = 'SHORT' # 'LONG'
>SET SIGNIF_CUTOFF = 8 3
>SET SEARCH_RANDOMIZATIONS = 10
>SET STOP_ON_ERROR = 2
>CALL ROUTINE = 'sequence_srch', SEGFILE = 'ny10.chn', SEQUENCE = 'ny10'
>
> I want to use this program to get the alignment and using the
alignment
>to get the template sequence and get the model by homology modelling.
> The ny10.chn is one chain protein with 68 a.a. , and I set the
>ATOM_FILES_DIRECTORY is the all PDB files in my server. This program will
>be crash after abour the 45 min. I don't know what's wrong. My server is
>RedHat Linux 7.1 with PIII 1G cpu and 512Mb ram.
7.1 is notorious for its bugs. It crashes randomly blastpgp jobs too at
certain conditions. I would advise you to reproduce it on 6.2.
>Your friendly,
>Jack Wang
>
>
--
Azat Badretdinov,
Accelrys