Hi,
I've been using modeller 4 for about a year and just recently installed
modeller 6.
The problem I have is that I get segmentation fault when I try to run
one of the example
files for instance 'model-fast.top' in the exemples/tutorial-model
directory.
I'll get the error when the program writes:
"Restraint type to be calculated: distance"
An strace of the program before it crashes look like this:
write(1, "Dynamically allocated memory at "..., 94Dynamically allocated
memory at amprmcns [B,kB,MB]: 6625069 6469.794
6.318
) = 94
write(1, "make_re_417_> Restraint type to "..., 57make_re_417_> Restraint
type to be calculated: distance
) = 57
stat64("5fd1", 0xbfff4cb8) = -1 ENOENT (No such file or
directory)
stat64("5fd1.Z", 0xbfff4cb8) = -1 ENOENT (No such file or
directory)
stat64("pdb5fd1", 0xbfff4cb8) = -1 ENOENT (No such file or
directory)
stat64("pdb5fd1.Z", 0xbfff4cb8) = -1 ENOENT (No such file or
directory)
stat64("./5fd1", 0xbfff4cb8) = -1 ENOENT (No such file or
directory)
stat64("./5fd1.Z", 0xbfff4cb8) = -1 ENOENT (No such file or
directory)
stat64("./pdb5fd1", 0xbfff4cb8) = -1 ENOENT (No such file or
directory)
stat64("./pdb5fd1.Z", 0xbfff4cb8) = -1 ENOENT (No such file or
directory)
stat64("./5fd1.atm", {st_mode=S_IFREG|0644, st_size=84641, ...}) = 0
brk(0x9571000) = 0x9571000
--- SIGSEGV (Segmentation fault) ---
+++ killed by SIGSEGV +++
Any suggestions?
Sincerely
Björn
--
Björn Wallner Stockholm Bioinformatics Center
PhD Student SCFAB, Stockholm University
S-106 91 Stockholm
Tel:+46-8-553 785 66 Fax:+46-8-5537 8214
Cell:070-521 56 65