Modeller_Usage Mailing List (by thread)
- GPCR,
Dan Thomas Major
- <Possible follow-ups>
- GPCR,
Dan Thomas Major
- Re: GPCR,
Dan Thomas Major
- GPCR,
Rosalia Pascual
- (no subject),
Alexander Farley
- [Fwd: GPCR],
Dan Thomas Major
- Question,
Paolo Daniele
- MD refinement,
Giulio Rastelli
- stepwise top,
Dan Thomas Major
- ask again: disaster,
zhenyisong
- Potential energy calculations with MODELLER,
Francois Sampieri
- Question about log files,
Xavier Gallet
- select_loop_atoms,
Obdulia Rabal
- starting problem,
Boojala Reddy
- malign3D question,
Karen C. Ellis
- protein structure file (psf),
Nitin Rathore
- SEQUENCE_COMPARISON,
Obdulia Rabal
- disulfides,
Daniel John Rigden
- RE: SS bridges,
Andrej Sali
- <Possible follow-ups>
- SS bridges,
Bozidar Yerkovich
- Error using MALIGN3D,
Michael Buck
- RE: reask,
Andrej Sali
- Helix kink,
Dan Thomas Major
- memory requirements,
Ada Prochnicka-Chalufour
- sequence_search,
marco sette
- library error,
dkabic01
- Non-bonded clashes,
Derek Smith
- SGI:segmentation fault,
Ada Prochnicka-Chalufour
- difference between version 4 and 6,
Luca Settimo
- Re: Protein Structure File (psf) - III,
Nitin Rathore
- model_loop,
Gilles Labesse
- Are You Paying Too Much For Life Insurance? KYG,
TermQuotes
- Hello sir,
deepa thangavelu
- <Possible follow-ups>
- Hello Sir,
deepa thangavelu
- 3D Gap penalty,
Lei Wang
- create a disulphide in a protein,
Giulio Rastelli
- ** MODELLER Support ** create a disulphide in a protein,
Bozidar Jerkovic
- ** MODELLER Support ** Docking with modeller ?,
Bozidar Jerkovic
- Modelling Heme,
Christoph Nimptsch
- MODELLING LOOPS,
Obdulia Rabal
- restraints on beta strands,
Juliette Martin
- errror in .log,
Giulio Rastelli
- How to model DNA binding protein,
Michael Buck
- TRANFER_XYZ (cluster_cut>0),
Obdulia Rabal
- strand restraints,
Reuter Nathalie
- bug report,
vuissoz Jean-Marc
- mkspline_E,
Luca Settimo
- Re: starting problem (fwd),
Boojala Reddy
- ** MODELLER Support ** TEST PLEASE IGNORE,
Bozidar Jerkovic
- objetive function in Modeller and z score in Prosa,
Violet Chang
- Hai modeller people!!!!!!!!,
R Senthil Kumar
- Using NAD,
bessiew
- ** MODELLER SUPPORT ** RE: Hai modeller people!!!!!!!!,
Bozidar Jerkovic
- Strange Error,
Michael Buck
- modelling of small peptide,
Violet Chang
- basic question?,
Michael Buck
- starting modeller: what's wrong?,
Ari M. Siqueira
- Re: modeller,
Bozidar Jerkovic
- ** MODELLER Support ** Re: modeller,
Bozidar Jerkovic
- Silvana's question,
margot
- memory failure,
Francesco Musiani
- multiple domains,
Stefano Ciurli
- Problem with Sequence_Search,
Thorsten Schweikardt
- Fortran Runtime Error,
PENG
- Re: Problems optimizing when BLK residues are present,
Cláudio Soares
- New MODELLER 6v2 in a few weeks,
Bozidar
- restraints,
margot
- (OTCBB : LMGR) Paves the way in the Field of Optics D,
StockAlerts
- MODELLER web page problem with debbuger turned on in MS Internet Explorer,
Bozidar Jerkovic
- Re: Modeller problem,
Bozidar Jerkovic
- (OTCBB : DTMI) Special Investment Alert GQGT,
StockNews
- modeller for mac osX ???,
jacques deruchoud
- problem with BLK residues using multiple templates,
Lucy Forrest
- pdb format,
Stephane Coillet-Matillon
- SKipping models,
Gordon Wells
- Re: modeler,
Bozidar Jerkovic
- (OTCBB: PLRP) Continues to Set Record Volumes,
elco
- failed to allocate maxcell,
Mateusz Nowak
- Inquiry - Modeller (How to begin a program?),
gt4578a
- How to start,
Jianchao YAO
- (OTCBB: LMGR) Paves the Way in the Field of Optics,
tsu
- model coordinate uncertainty,
margot
- Investors in the Stock Market: QY,
chrislyne
- CHANGE IN A SUBSCRIPTION POLICY Re: (Fwd) Investors in the Stock Market: QY,
Bozidar Jerkovic
- Re: CHANGE IN A SUBSCRIPTION POLICY Re: (Fwd) Investors in the Stock Market: QY,
Bozidar Jerkovic
- Stock,
Bozidar Jerkovic
- List update email,
Bozidar
- (OTCBB: WSCH) Special Investment Update,
traiber
- [no subject],
Bozidar Jerkovic
- [no subject],
Bozidar Jerkovic
- List security update,
Bozidar Jerkovic
- problem with sequence search,
michael hanlon (BITS)
- phospo-serine residues,
Voula Kanelis
- problem with template selection using compare,
michael hanlon (BITS)
- How to run the tutorial-model,
Jianchao YAO
- problem in running model script,
giulio
- RE: Questions,
Bozidar Jerkovic
- RE: How to do modeling with non-standard residue?,
Bozidar Jerkovic
- Submission of alignments,
Dinesh Soares
- theory info,
Luca Settimo
- RE: Reading_PDB_File,
Bozidar
- how to setup a nice modelling environment?,
Ari M. Siqueira
- Loop modeling: old vs. new,
Mensur Dlakic
- modified residues (pyruvoyl),
Gordon
- randomize dihedrals,
Evers Andreas
- Adding residues,
Dan Thomas Major
- RE: RE: Segmentation Fault during modelling with modeller6v1,
Bozidar
- [Fwd: Adding residues],
Dan Thomas Major
- Memory leak / kernel crash / missing chain_ID,
Bozidar Jerkovic
- RE: RE: RE: Segmentation Fault during modelling with modeller6v,
Bozidar
- array too small error,
Marina Gimpelev
- Re: Memory leak / kernel crash / missing chain_ID (fwd),
Bozidar Jerkovic
- MODELLER & XPLOR,
Mensur Dlakic
- Re: Running MODELLER,
Bozidar Jerkovic
- starting with 6v1,
Laurent Troxler
- Bad template?,
Lei Wang
- Re: Bad template?--log ali. and top files.,
Lei Wang
- LJ potentials,
Evers Andreas
- Modeller in queue,
Dan Thomas Major
- Re: 6v2,
Bozidar Yerkovich
- Comparing energy terms,
Dan Thomas Major
- Modeller 4,
Dinesh Soares
- modeller4,
sasson iris
- [no subject],
Mensur Dlakic
- Topology and parameter files for sugar residues in glycoproteins,
Andersen, Kim Vilbour (KVA)
- Better Prosa Z-scores for models than template,
Mensur Dlakic
- model evaluation,
Giselle Knudsen
- Alignment sequence not found in PDB file,
Rajesh Reddy
- SYMMETRY,
Valeria Costa
- Re:,
Bozidar Yerkovich
- MODELLER 6v2 available,
Bozidar Yerkovich
- Which loop energy?,
J Simms
- MODELLER for OsX (Was: MODELLER 6v2 available),
Bozidar Yerkovich
- Modeller for WIN,
Gianluca Croce
- Modelling multi subunit proteins,
Norbert Straeter
- problem in modeller,
syed azimuddin
- Mod 6v2 : array too small,
Juliette Martin
- Modelling post trans mods,
J Simms
- Mol file...,
Bkcho
- align problem,
Gianluca Croce
- array too small problem,
Tommy Wang
- user_distance, group restraints,
Karl Gruber
- Ideal helices,
Dan Thomas Major
- helix axis of alfa-helix,
Michael Petersen
- Error in win distribution,
Andras Fiser
- MPAIRS problem - 6.2 vs 6a,
Daniel John Rigden
- win-modeller,
Shamshad Zarina
- what is wrong?,
Yoram Devary
- the alignment problem,
Margot Ernst
- E> Array too small. Increase MPAIRS, 6v2 executable update July 4th 2002.,
Bozidar Yerkovich
- The sequence of template was wrongly read!,
Kong Lesheng
- Some problems with respect to non-standard residues,
Kong Lesheng
- What is de problem??,
Juan Palacios
- complete set of execs for repaired 6v2,
Bozidar Yerkovich
- new user,
erase test
- Fwd: modeller top files,
Bozidar Yerkovich
- Alignment problem,
Frederico Moreno
- PDB problem,
Frederico Moreno
- main chain atoms,
Carlos Sosa
- MAXSPL problem,
Tommy Wang
- Modelling Dimers,
Michael Buck
- selecting the alignment matrix,
Alessandro Contini
- Mac OS X MODELLER 6v2 is here!,
Bozidar Yerkovich
- glutamates patch,
Valeria Costa
- OSF versions of 6v0 and 6v2 give illegal instruction error,
Robert Williams
- MPAIRS,
Cameron Long
- hetero atoms,
Cameron Long
- Chains A,B,C,D,
Frederico Moreno
- RTF file for HYP,
Lesheng Kong
- How much time?,
Shamshad Zarina
- Why MODERLLER6v2 cannot recognize these Variables?,
Lesheng Kong
- CHARMM version?,
Dinesh Soares
- MAXRER,
Alessandro Contini
- Error message,
Troy Wymore
- Re: modeller restrain,
Bozidar Yerkovich
- Re: Modeller6v2 installation problem,
Bozidar Yerkovich
- "Array too small. Increase MBNDPF",
Kong Lesheng
- Admin update: modeller_usage digest,
Bozidar Yerkovich
- problems with optimaze,
Pedro A Reche
- disulfide bridges,
Pedro A Reche
- how are these restraints obtained?,
michael hanlon (BITS)
- How to avoid funny structure in all-hydrogen modeling?,
Lesheng Kong
- anti-hCG IgG1 structure,
zjnjuct
- OPTIMIZE,
Bozidar Yerkovich
- scoring models against X-ray data,
Karsten Suhre
- System crash!,
Shamshad Zarina
- Optimize in Modeller 6v2,
alextk
- 2 problems - HETATM_IO and strange log (fwd),
Frank J A B
- atom file,
조병관
- 'sequence not read in',
조병관
- Re: Modeller for Mac OS X,
Bozidar Yerkovich
- HETATM_IO and strange log,
Frank J A B
- # SET SELECTION_SEARCH = 'SPHERE_SEGMENT', SPHERE_RADIUS = 6,
Bozidar Yerkovich
- Bounced emails,
Bozidar Yerkovich
- embarassingly parallel modeller,
David E. Konerding
- stuck,
Jory L. Zmuda
- B-factors in Modeller,
Dinesh Soares
- Gaps in the PDB file,
Fabio Passetti
- use of Modeller in molecular replacement (X-ray cristallography),
Karsten Suhre
- SEQUENCE_SEARCH problems,
Alex Brown
- HETATM_IO,
Ralf Schmid
- compare problems,
Alex Brown
- Problem with --error --- SEQUENCE_SEARCH --,
Juan Palacios
- /pipe1/databases/pdb/uncompressed_files/pdb1hci.ent,
Bozidar Yerkovich
- Subject: models for MR,
Bozidar Yerkovich
- SEQUENCE_SEARCH Question,
Alex Brown
- problem with "Sequence_search".. After executing "sequence_search" for two hours does not deliver result,
Juan Palacios
- align2d warnings,
Alex Brown
- TvLDH Example,
Alex Brown
- Problems with modeling chimera,
Andersen, Kim Vilbour (KVA)
- a bug?,
Kong Lesheng
- Multiple Template Alignment Problems - MAXRES,
Alex Brown
- ProsaII and Procheck,
Alex Brown
- surface electrostatics and hydrogens,
Douglas Kojetin
- SS prediction,
Santiago Ramon
- Basic Modeling Question,
Alex Brown
- No log file in Windows 2000,
John Penniston
- new user and domain movements,
Jenny . Carmichael
- Windows,
John Penniston
- Atom index out of range,
Satyan Sharma
- PDB format problem...,
유아림
- [no subject],
Santiago Ramon
- problem with SET MD_LEVEL,
Frank J A B
- Usage,
Lewis, John
- Problems reading in pdb template file,
Ralph Elison
- modeller usage,
Somanadh Babu
- Question on 1fdx example,
Richard Friedman
- Problem to modeller,
Juan Palacios
- Bug reported in previous message - Description and Workaround,
Richard Friedman
- Is this a bug?,
Richard Friedman
- Installation problems Windows XP,
Simon P Gough
- Redhat 8.0 Error,
Bradley J. S. C. Olson
- Fwd:,
Santiago Ramon
- Re: MODELLER (Win XP),
Bozidar Yerkovich
- Re: <no subject>,
Bozidar Yerkovich
- Re: Problem in MODELLER6v2 installation,
Bozidar Yerkovich
- modeller installation on XP,
g e
- Any Modeller Users in Chicago?,
g e
- Lets Get Together,
Lewis, John
- Re: /etc/profile instead ~/.bashrc for linux,
Bozidar Yerkovich
- Modelling domains,
Satyan Sharma
- [no subject],
Andrej Sali
- Re: FW: Query,
Andras Fiser
- Putting in a heteroatom,
John Penniston
- Re: problems,
Bozidar Yerkovich
- Loop Modeling,
Alex Brown
- error: Structure not read in,
Dr. Dan White
- Heteratom problems, message 1,
John Penniston
- Heteroatom problem, message 2,
John Penniston
- electrostatic potential,
Yang Xiaolin
- tetrameric protein,
bharat adkar
- Heteroatom problem solved,
John T. Penniston
- postdocs,
Andras Fiser
- Adding ligands to my MODEL,
Troy Wymore
- Bump checking with modeller,
Frank J A B
- restraining sec. structure elements,
Frank J A B
- low sequence identity,
Margot Ernst
- leaving gaps in non aligned regions,
Gowthaman R
- floating invalid,
Marcos Bonfadini
- error 648 with modeller,
Cédric Bauvois
- assign force field,
Yang Xiaolin
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