Modeller_Usage Mailing List (by date)

Thread Index

GPCR 2002/01/02
- From: Dan Thomas Major <>
(no subject) 2002/01/05
- From: Alexander Farley <>
[Fwd: GPCR] 2002/01/07
- From: Dan Thomas Major <>
GPCR 2002/01/07
- From: Dan Thomas Major <>
Re: GPCR 2002/01/07
- From: Dan Thomas Major <>
Question 2002/01/07
- From: Paolo Daniele <>
RE: Question 2002/01/07
- From: "Andrej Sali" <>
Re: Question 2002/01/07
- From: "Eric Feyfant" <>
MD refinement 2002/01/09
- From: Giulio Rastelli <>
SUPPORT: Re: MD refinement 2002/01/09
- From: Andras Fiser <>
stepwise top 2002/01/10
- From: Dan Thomas Major <>
RE: stepwise top 2002/01/10
- From: "Andrej Sali" <>
RE: stepwise top 2002/01/10
- From: Michael Buck <>
Segmentation fault with modeller 6 2002/01/11
- From: Björn Wallner <>
chain breaks 2002/01/11
- From: "Christopher A. Wells" <>
ask again: disaster 2002/01/15
- From: "zhenyisong" <>
Potential energy calculations with MODELLER 2002/01/16
- From: Francois Sampieri <>
RE: Potential energy calculations with MODELLER 2002/01/16
- From: "Andrej Sali" <>
SUPPORTRe: chain breaks 2002/01/16
- From: Andras Fiser <>
Question about log files 2002/01/17
- From: Xavier Gallet <>
Re: Question about log files 2002/01/17
- From: "T. .R. Dafforn" <>
Re: Question about log files 2002/01/17
- From: Andras Fiser <>
select_loop_atoms 2002/01/17
- From: Obdulia Rabal <>
Re: Question about log files 2002/01/17
- From: "T. .R. Dafforn" <>
starting problem 2002/01/20
- From: Boojala Reddy <>
Re: starting problem-working fine 2002/01/20
- From: Boojala Reddy <>
malign3D question 2002/01/21
- From: "Karen C. Ellis" <>
protein structure file (psf) 2002/01/21
- From: "Nitin Rathore" <>
SEQUENCE_COMPARISON 2002/01/22
- From: Obdulia Rabal <>
RE: protein structure file (psf) 2002/01/22
- From: "Bozidar Jerkovic" <>
disulfides 2002/01/23
- From: Daniel John Rigden <>
RE: disulfides 2002/01/23
- From: "Andrej Sali" <>
RE: disulfides 2002/01/23
- From: Daniel John Rigden <>
RE: SS bridges 2002/01/24
- From: "Andrej Sali" <>
Error using MALIGN3D 2002/01/24
- From: Michael Buck <>
RE: Error using MALIGN3D 2002/01/24
- From: "Andrej Sali" <>
RE: malign3D question 2002/01/24
- From: "Andrej Sali" <>
RE: reask 2002/01/24
- From: "Andrej Sali" <>
Helix kink 2002/01/26
- From: "Dan Thomas Major" <>
RE: Helix kink 2002/01/26
- From: "Andrej Sali" <>
memory requirements 2002/01/28
- From: Ada Prochnicka-Chalufour <>
sequence_search 2002/01/28
- From: marco sette <>
library error 2002/01/28
- From: dkabic01 <>
** MODELLER Support ** RE: memory requirements 2002/01/28
- From: "Bozidar Jerkovic" <>
** MODELLER Support ** RE: memory requirements 2002/01/28
- From: "Bozidar Jerkovic" <>
Re: memory requirements 2002/01/28
- From: Andras Fiser <>
Re: sequence_search 2002/01/28
- From: Andras Fiser <>
Re: library error 2002/01/28
- From: Andras Fiser <>
Non-bonded clashes 2002/01/29
- From: Derek Smith <>
SGI:segmentation fault 2002/01/31
- From: Ada Prochnicka-Chalufour <>
difference between version 4 and 6 2002/01/31
- From: Luca Settimo <>
RE: difference between version 4 and 6 2002/02/01
- From: Andras Fiser <>
protein structure file (psf)-II 2002/02/01
- From: "Nitin Rathore" <>
protein structure file (psf)- III 2002/02/01
- From: "Nitin Rathore" <>
Re: Protein Structure File (psf) - III 2002/02/04
- From: "Nitin Rathore" <>
model_loop 2002/02/04
- From: Gilles Labesse <>
Are You Paying Too Much For Life Insurance? KYG 2002/02/05
- From:
Hello sir 2002/02/08
- From: deepa thangavelu <>
Re: model_loop problem 2002/02/08
- From: Andras Fiser <>
3D Gap penalty 2002/02/08
- From: Lei Wang <>
create a disulphide in a protein 2002/02/11
- From: Giulio Rastelli <>
Re: create a disulphide in a protein 2002/02/11
- From: Roberto Sanchez <>
** MODELLER Support ** create a disulphide in a protein 2002/02/11
- From: Bozidar Jerkovic <>
Re: create a disulphide in a protein 2002/02/11
- From: Roberto Sanchez <>
** MODELLER Supposrt ** 3D Gap penalty 2002/02/11
- From: "Bozidar Jerkovic" <>
** MODELLER Support ** Docking with modeller ? 2002/02/12
- From: "Bozidar Jerkovic" <>
Modelling Heme 2002/02/13
- From: Christoph Nimptsch <>
MODELLING LOOPS 2002/02/13
- From: Obdulia Rabal <>
restraints on beta strands 2002/02/13
- From: Juliette Martin <>
Re: Modelling Heme 2002/02/13
- From: fisera <>
Re: Modelling Heme 2002/02/13
- From: Roberto Sanchez <>
errror in .log 2002/02/14
- From: Giulio Rastelli <>
RE: errror in .log 2002/02/14
- From: "Andrej Sali" <>
How to model DNA binding protein 2002/02/14
- From: Michael Buck <>
TRANFER_XYZ (cluster_cut>0) 2002/02/15
- From: Obdulia Rabal <>
strand restraints 2002/02/15
- From: Reuter Nathalie <>
Re: strand restraints 2002/02/15
- From: Andras Fiser <>
Re: TRANFER_XYZ (cluster_cut>0) 2002/02/16
- From: fisera <>
bug report 2002/02/16
- From: vuissoz Jean-Marc <>
Re: bug report 2002/02/16
- From: fisera <>
** MODELLER Support ** bug report 2002/02/16
- From: "Bozidar Jerkovic" <>
** MODELLER Support ** IMPORTANT PLEASE READE! 2002/02/16
- From: "Bozidar Jerkovic" <>
mkspline_E 2002/02/18
- From: Luca Settimo <>
RE: mkspline_E 2002/02/18
- From: "Andrej Sali" <>
Re: starting problem (fwd) 2002/02/18
- From: Boojala Reddy <>
Re: mkspline_E 2002/02/18
- From: fisera <>
** MODELLER Support ** TEST PLEASE IGNORE 2002/02/18
- From: "Bozidar Jerkovic" <>
** MODELLER SUPPORT ** TEST PLEASE IGNORE 2002/02/18
- From: "Bozidar Jerkovic" <>
objetive function in Modeller and z score in Prosa 2002/02/18
- From: Violet Chang <>
Re: objetive function in Modeller and z score in Prosa 2002/02/18
- From: fisera <>
Hai modeller people!!!!!!!! 2002/02/19
- From: R Senthil Kumar <>
Using NAD 2002/02/19
- From: bessiew <>
** MODELLER SUPPORT ** RE: Hai modeller people!!!!!!!! 2002/02/19
- From: "Bozidar Jerkovic" <>
Re: Using NAD 2002/02/19
- From: fisera <>
** MODELLER SUPPORT ** RE: Hai modeller people!!!!!!!! 2002/02/19
- From: Bozidar Jerkovic <>
** MODELLER SUPPORT ** RE: starting problem (fwd) 2002/02/20
- From: Bozidar BJ Jerkovic <>
Strange Error 2002/02/22
- From: Michael Buck <>
modelling of small peptide 2002/02/25
- From: Violet Chang <>
Hello Sir 2002/02/25
- From: deepa thangavelu <>
basic question? 2002/02/26
- From: Michael Buck <>
Re: modelling of small peptide 2002/02/26
- From: Andras Fiser <>
Re: basic question? 2002/02/26
- From: Andras Fiser <>
starting modeller: what's wrong? 2002/02/27
- From: "Ari M. Siqueira" <>
** MODELLER Support ** RE: starting modeller: what's wrong? 2002/02/27
- From: "Bozidar" <>
Re: starting modeller: what's wrong? 2002/02/27
- From: Michael Buck <>
** MODELLER Support ** RE: Strange Error 2002/02/27
- From: "Bozidar Jerkovic" <>
Re: modeller 2002/02/27
- From: Bozidar Jerkovic <>
** MODELLER Support ** Re: modeller 2002/02/27
- From: Bozidar Jerkovic <>
Re: ** MODELLER Support ** Re: modeller 2002/02/27
- From: Yugo Acimovic <>
Silvana's question 2002/02/28
- From: margot <>
memory failure 2002/02/28
- From: Francesco Musiani <>
Re: memory failure 2002/02/28
- From: Björn Wallner <>
** MODELLER Support ** RE: memory failure 2002/02/28
- From: "Bozidar" <>
multiple domains 2002/03/01
- From: Stefano Ciurli <>
Problem with Sequence_Search 2002/03/01
- From: Thorsten Schweikardt <>
RE: Problem with Sequence_Search 2002/03/01
- From: "Bozidar Jerkovic" <>
Fortran Runtime Error 2002/03/03
- From: "PENG" <>
RE: Fortran Runtime Error 2002/03/03
- From: "Bozidar" <>
RE: Problem with Sequence_Search 2002/03/03
- From: "Bozidar Jerkovic" <>
Re: Problems optimizing when BLK residues are present 2002/03/05
- From: Cláudio Soares <>
New MODELLER 6v2 in a few weeks 2002/03/05
- From: "Bozidar" <>
restraints 2002/03/06
- From: margot <>
(OTCBB : LMGR) Paves the way in the Field of Optics D 2002/03/06
- From:
restraints 2002/03/07
- From: margot <>
RE: restraints 2002/03/07
- From: "Bozidar Jerkovic" <>
MODELLER web page problem with debbuger turned on in MS Internet Explorer 2002/03/07
- From: "Bozidar Jerkovic" <>
Re: Modeller problem 2002/03/08
- From: Bozidar Jerkovic <>
Re: restraints 2002/03/08
- From: Andras Fiser <>
Re: Strange Error 2002/03/08
- From: Andras Fiser <>
Re: multiple domains 2002/03/08
- From: Andras Fiser <>
Re: Problems optimizing when BLK residues are present 2002/03/08
- From: Andras Fiser <>
(OTCBB : DTMI) Special Investment Alert GQGT 2002/03/15
- From:
modeller for mac osX ??? 2002/03/19
- From: jacques deruchoud <>
problem with BLK residues using multiple templates 2002/03/19
- From: Lucy Forrest <>
pdb format 2002/03/19
- From: Stephane Coillet-Matillon <>
RE: pdb format 2002/03/19
- From: "Bozidar" <>
RE: pdb format 2002/03/20
- From: Stephane Coillet-Matillon <>
RE: pdb format 2002/03/20
- From: "Bozidar Jerkovic" <>
Re: RE: pdb format 2002/03/20
- From: "Eric Feyfant" <>
SKipping models 2002/03/22
- From: Gordon Wells <>
Re: modeler 2002/03/22
- From: Bozidar Jerkovic <>
SUPPORT Re: SKipping models 2002/03/22
- From: fisera <>
GPCR 2002/03/22
- From: Rosalia Pascual <>
(OTCBB: PLRP) Continues to Set Record Volumes 2002/03/27
- From:
failed to allocate maxcell 2002/03/27
- From: Mateusz Nowak <>
Inquiry - Modeller (How to begin a program?) 2002/03/29
- From:
How to start 2002/03/29
- From: "Jianchao YAO" <>
Re: How to start 2002/03/30
- From: Bozidar Jerkovic <>
(OTCBB: LMGR) Paves the Way in the Field of Optics 2002/04/01
- From:
model coordinate uncertainty 2002/04/02
- From: margot <>
Re: model coordinate uncertainty 2002/04/02
- From: Michael Buck <>
Investors in the Stock Market: QY 2002/04/02
- From: "chrislyne" <>
CHANGE IN A SUBSCRIPTION POLICY Re: (Fwd) Investors in the Stock Market: QY 2002/04/02
- From: Bozidar Jerkovic <>
Re: CHANGE IN A SUBSCRIPTION POLICY Re: (Fwd) Investors in the Stock Market: QY 2002/04/02
- From: Bozidar Jerkovic <>
Stock 2002/04/03
- From: Bozidar Jerkovic <>
List update email 2002/04/03
- From: "Bozidar" <>
(OTCBB: WSCH) Special Investment Update 2002/04/05
- From:
model coordinate uncertainty 2002/04/08
- From: margot <>
(OTCBB: WSCH) Special Investment Update 2002/04/08
- From:
Re: MODELLER 2002/04/08
- From: Bozidar Jerkovic <>
[no subject] 2002/04/08
- From: Bozidar Jerkovic <>
[no subject] 2002/04/08
- From: Bozidar Jerkovic <>
List security update 2002/04/08
- From: Bozidar Jerkovic <>
problem with sequence search 2002/04/09
- From: "michael hanlon (BITS)" <>
RE: problem with sequence search 2002/04/09
- From: "Bozidar" <>
phospo-serine residues 2002/04/10
- From: Voula Kanelis <>
problem with template selection using compare 2002/04/10
- From: "michael hanlon (BITS)" <>
How to run the tutorial-model 2002/04/11
- From: "Jianchao YAO" <>
problem in running model script 2002/04/11
- From:
RE: Questions 2002/04/12
- From: "Bozidar Jerkovic" <>
RE: phospo-serine residues 2002/04/12
- From: "Bozidar Jerkovic" <>
RE: How to do modeling with non-standard residue? 2002/04/12
- From: "Bozidar Jerkovic" <>
FW: FW: MODELLER 2002/04/12
- From: "Bozidar" <>
Re: phospo-serine residues 2002/04/12
- From: Andras Fiser <>
Submission of alignments 2002/04/14
- From: "Dinesh Soares" <>
theory info 2002/04/15
- From: Luca Settimo <>
RE: Reading_PDB_File 2002/04/15
- From: "Bozidar" <>
Cutsom build residues, was RE: phospo-serine residues 2002/04/15
- From: "Bozidar Jerkovic" <>
how to setup a nice modelling environment? 2002/04/16
- From: "Ari M. Siqueira" <>
Loop modeling: old vs. new 2002/04/17
- From: Mensur Dlakic <>
modified residues (pyruvoyl) 2002/04/17
- From: Gordon <>
Re: Loop modeling: old vs. new 2002/04/17
- From: Bozidar Jerkovic <>
Re: theory info 2002/04/17
- From: Andras Fiser <>
Re: Loop modeling: old vs. new 2002/04/17
- From: Andras Fiser <>
RE: theory info 2002/04/17
- From: "Bozidar Jerkovic" <>
randomize dihedrals 2002/04/18
- From: Evers Andreas <>
Adding residues 2002/04/22
- From: Dan Thomas Major <>
RE: RE: Segmentation Fault during modelling with modeller6v1 2002/04/22
- From: "Bozidar" <>
[Fwd: Adding residues] 2002/04/22
- From: Dan Thomas Major <>
RE: RE: Segmentation Fault during modelling with modeller6v1 2002/04/23
- From: "Bozidar" <>
Memory leak / kernel crash / missing chain_ID 2002/04/23
- From: "Bozidar Jerkovic" <>
RE: RE: RE: Segmentation Fault during modelling with modeller6v 2002/04/24
- From: "Bozidar" <>
array too small error 2002/04/24
- From: Marina Gimpelev <>
Re: array too small error 2002/04/24
- From: Bozidar Jerkovic <>
Re: Memory leak / kernel crash / missing chain_ID (fwd) 2002/04/25
- From: Bozidar Jerkovic <>
Re: Memory leak / kernel crash / missing chain_ID 2002/04/25
- From: Bozidar Jerkovic <>
MODELLER & XPLOR 2002/04/26
- From: Mensur Dlakic <>
Re: Running MODELLER 2002/04/26
- From: Bozidar Jerkovic <>
starting with 6v1 2002/05/02
- From: Laurent Troxler <>
Re: starting with 6v1 2002/05/02
- From: Bozidar Jerkovic <>
Bad template? 2002/05/02
- From: Lei Wang <>
Re: Bad template?--log ali. and top files. 2002/05/02
- From: Lei Wang <>
LJ potentials 2002/05/02
- From: Evers Andreas <>
modeling cis-proline 2002/05/03
- From: Douglas Kojetin <>
using modeller w/ multiple CPUs 2002/05/05
- From: Douglas Kojetin <>
modeller 2002/05/06
- From: Andras Fiser <>
Re: modeller 2002/05/07
- From: Doug Kojetin <>
Re: modeller 2002/05/07
- From: Bozidar Yerkovich <>
Modeller in queue 2002/05/08
- From: Dan Thomas Major <>
Re: Modeller in queue 2002/05/08
- From: "Roberto Sanchez" <>
Re: 6v2 2002/05/10
- From: Bozidar Yerkovich <>
Comparing energy terms 2002/05/11
- From: Dan Thomas Major <>
Re: Comparing energy terms 2002/05/12
- From: Andras Fiser <>
Modeller 4 2002/05/13
- From: "Dinesh Soares" <>
Re: Modeller 4 2002/05/13
- From: Bozidar Yerkovich <>
Re: Modeller 4 2002/05/13
- From: "Dinesh Soares" <>
modeller4 2002/05/13
- From: sasson iris <>
[no subject] 2002/05/15
- From: Mensur Dlakic <>
Topology and parameter files for sugar residues in glycoproteins 2002/05/17
- From: "Andersen, Kim Vilbour (KVA)" <>
Topology and parameter files for sugar residues in glycoproteins 2002/05/17
- From: Bozidar Yerkovich <>
Better Prosa Z-scores for models than template 2002/05/17
- From: Mensur Dlakic <>
Re: Better Prosa Z-scores for models than template 2002/05/17
- From: "Roberto Sanchez" <>
model evaluation 2002/05/19
- From: Giselle Knudsen <>
Alignment sequence not found in PDB file 2002/05/20
- From: "Rajesh Reddy" <>
RMSD calculation 2002/05/20
- From: Douglas Kojetin <>
Re: RMSD calculation 2002/05/20
- From: Bozidar Yerkovich <>
SYMMETRY 2002/05/21
- From: Valeria Costa <>
Re: RMSD calculation 2002/05/24
- From: Douglas Kojetin <>
Re: RMSD calculation 2002/05/24
- From: Eashwar Narayanan <>
Re: 2002/05/28
- From: Bozidar Yerkovich <>
Hai!!! 2002/05/29
- From: R Senthil Kumar <>
MODELLER 6v2 available 2002/05/30
- From: Bozidar Yerkovich <>
Which loop energy? 2002/05/30
- From: "J Simms" <>
MODELLER for OsX (Was: MODELLER 6v2 available) 2002/05/30
- From: Bozidar Yerkovich <>
re:MODELLER for OsX (Was: MODELLER 6v2 available) 2002/05/30
- From: Prevost Martine <>
Re: Which loop energy? 2002/05/30
- From: fisera <>
Modeller for WIN 2002/06/03
- From: "Gianluca Croce" <>
Re: Modeller for WIN 2002/06/03
- From: Hafsa Ahsan <>
Modelling multi subunit proteins 2002/06/05
- From: Norbert Straeter <>
Re: Modelling multi subunit proteins 2002/06/05
- From: Andras Fiser <>
Re: Modelling multi subunit proteins 2002/06/05
- From: Andras Fiser <>
problem in modeller 2002/06/08
- From: "syed azimuddin" <>
Mod 6v2 : array too small 2002/06/10
- From: Juliette Martin <>
Modelling post trans mods 2002/06/11
- From: "J Simms" <>
Re: Modelling post trans mods 2002/06/11
- From: Andras Fiser <>
Mol file... 2002/06/13
- From: "Bkcho" <>
align problem 2002/06/14
- From: "Gianluca Croce" <>
array too small problem 2002/06/15
- From: Tommy Wang <>
user_distance, group restraints 2002/06/18
- From: Karl Gruber <>
Ideal helices 2002/06/18
- From: Dan Thomas Major <>
Re: Ideal helices 2002/06/18
- From: "Peter C. Lai" <>
helix axis of alfa-helix 2002/06/19
- From: "Michael Petersen" <>
Error in win distribution 2002/06/20
- From: Andras Fiser <>
MPAIRS problem - 6.2 vs 6a 2002/06/20
- From: Daniel John Rigden <>
win-modeller 2002/06/24
- From: Shamshad Zarina <>
Re: win-modeller 2002/06/24
- From: Mensur Dlakic <>
Re: win-modeller 2002/06/24
- From: "Peter C. Lai" <>
what is wrong? 2002/06/25
- From: "Yoram Devary" <>
Re: what is wrong? 2002/06/25
- From: Andras Fiser <>
the alignment problem 2002/07/04
- From: Margot Ernst <>
Re: the alignment problem 2002/07/04
- From: Daniel John Rigden <>
Re: the alignment problem 2002/07/04
- From: (Paul Davis)
E> Array too small. Increase MPAIRS, 6v2 executable update July 4th 2002. 2002/07/04
- From: Bozidar Yerkovich <>
6v2 executable update July 4th 2002. 2002/07/04
- From: Bozidar Yerkovich <>
The sequence of template was wrongly read! 2002/07/07
- From: "Kong Lesheng" <>
Some problems with respect to non-standard residues 2002/07/08
- From: "Kong Lesheng" <>
the alignment problem 2002/07/08
- From: Margot Ernst <>
What is de problem?? 2002/07/09
- From: "Juan Palacios" <>
complete set of execs for repaired 6v2 2002/07/09
- From: Bozidar Yerkovich <>
new user 2002/07/11
- From: erase test <>
Fwd: modeller top files 2002/07/12
- From: Bozidar Yerkovich <>
What is the problem?? 2002/07/16
- From: sasson iris <>
Re: What is the problem?? 2002/07/16
- From: fisera <>
Alignment problem 2002/07/18
- From: Frederico Moreno <>
Re: Alignment problem 2002/07/18
- From: Bozidar Yerkovich <>
PDB problem 2002/07/18
- From: Frederico Moreno <>
Re: PDB problem 2002/07/18
- From: Bozidar Yerkovich <>
main chain atoms 2002/07/18
- From: "Carlos Sosa" <>
Re: main chain atoms 2002/07/19
- From: Andras Fiser <>
MAXSPL problem 2002/07/19
- From: Tommy Wang <>
unknown residue type ERROR MESSEGE 2002/07/21
- From: sasson iris <>
Re: unknown residue type ERROR MESSEGE 2002/07/22
- From: Andras Fiser <>
Modelling Dimers 2002/07/25
- From: Michael Buck <>
Re: Modelling Dimers 2002/07/25
- From: Daniel John Rigden <>
selecting the alignment matrix 2002/07/25
- From: Alessandro Contini <>
Mac OS X MODELLER 6v2 is here! 2002/07/25
- From: Bozidar Yerkovich <>
Re: Mac OS X MODELLER 6v2 is here! 2002/07/25
- From: "Peter C. Lai" <>
glutamates patch 2002/07/26
- From: Valeria Costa <>
Re: Mac OS X MODELLER 6v2 is here! 2002/07/26
- From: Bozidar Yerkovich <>
OSF versions of 6v0 and 6v2 give illegal instruction error 2002/07/26
- From: Robert Williams <>
MPAIRS 2002/07/26
- From: Cameron Long <>
hetero atoms 2002/07/29
- From: Cameron Long <>
Re: MPAIRS 2002/07/29
- From: Bozidar Yerkovich <>
Re: OSF versions of 6v0 and 6v2 give illegal instruction error 2002/07/29
- From: Bozidar Yerkovich <>
Chains A,B,C,D 2002/07/29
- From: Frederico Moreno <>
Re: Chains A,B,C,D 2002/07/29
- From: Bozidar Yerkovich <>
RTF file for HYP 2002/07/30
- From: Lesheng Kong <>
How much time? 2002/07/30
- From: Shamshad Zarina <>
Re: How much time? 2002/07/30
- From: Mensur Dlakic <>
Why MODERLLER6v2 cannot recognize these Variables? 2002/07/30
- From: Lesheng Kong <>
CHARMM version? 2002/07/31
- From: "Dinesh Soares" <>
MAXRER 2002/07/31
- From: Alessandro Contini <>
Re: How much time? 2002/07/31
- From: Shamshad Zarina <>
Re: How much time? 2002/07/31
- From: Bozidar Yerkovich <>
Re: MAXRER 2002/08/01
- From: Bozidar Yerkovich <>
Re: OSF versions of 6v0 and 6v2 give illegal instruction error 2002/08/01
- From: Bozidar Yerkovich <>
Re: CHARMM version? 2002/08/01
- From: Bozidar Yerkovich <>
Error message 2002/08/01
- From: Troy Wymore <>
Re: Error message 2002/08/01
- From: Bozidar Yerkovich <>
Re: Error message 2002/08/01
- From: Troy Wymore <>
Re: Error message 2002/08/01
- From: Bozidar Yerkovich <>
Re: modeller restrain 2002/08/02
- From: Bozidar Yerkovich <>
Re: Error message 2002/08/02
- From: Bozidar Yerkovich <>
modeller 2002/08/04
- From: sasson iris <>
Re: Modeller6v2 installation problem 2002/08/06
- From: Bozidar Yerkovich <>
MAXPL , STDEV 2002/08/11
- From: sasson iris <>
Another error 2002/08/11
- From: sasson iris <>
"Array too small. Increase MBNDPF" 2002/08/12
- From: Kong Lesheng <>
Re: MAXPL , STDEV 2002/08/12
- From: Bozidar Yerkovich <>
Re: Another error 2002/08/12
- From: Bozidar Yerkovich <>
Admin update: modeller_usage digest 2002/08/12
- From: Bozidar Yerkovich <>
Potential 2002/08/13
- From: sasson iris <>
problems with optimaze 2002/08/13
- From: Pedro A Reche <>
Re: problems with optimaze 2002/08/13
- From: Bozidar Yerkovich <>
adding calcium ion for modelling 2002/08/14
- From: Nyoman Kurniawan <>
disulfide bridges 2002/08/14
- From: Pedro A Reche <>
SS bridges 2002/08/14
- From: Bozidar Yerkovich <>
Re: Re: "Array too small. Increase MBNDPF" 2002/08/15
- From: Kong Lesheng <>
Re: Re: "Array too small. Increase MBNDPF" 2002/08/15
- From: Bozidar Yerkovich <>
Alignment sequence not found in PDB file 2002/08/15
- From: Karsten Suhre <>
Re: Alignment sequence not found in PDB file 2002/08/15
- From: Bozidar Yerkovich <>
Re: Alignment sequence not found in PDB file 2002/08/16
- From: Karsten Suhre <>
Re: Alignment sequence not found in PDB file 2002/08/16
- From: Bozidar Yerkovich <>
point mutation modeling 2002/08/16
- From: Jonathan Esguerra <>
Re: Alignment sequence not found in PDB file 2002/08/16
- From: Karsten Suhre <>
Re: point mutation modeling 2002/08/16
- From: Bozidar Yerkovich <>
Re: Alignment sequence not found in PDB file 2002/08/16
- From: Bozidar Yerkovich <>
how are these restraints obtained? 2002/08/21
- From: "michael hanlon (BITS)" <>
How to avoid funny structure in all-hydrogen modeling? 2002/08/21
- From: Lesheng Kong <>
Re: How to avoid funny structure in all-hydrogen modeling? 2002/08/21
- From: Bozidar Yerkovich <>
Re: how are these restraints obtained? 2002/08/21
- From: Andras Fiser <>
anti-hCG IgG1 structure 2002/08/23
- From: zjnjuct <>
OPTIMIZE 2002/08/26
- From: Bozidar Yerkovich <>
criteria for best template....after comparison of many structures 2002/08/26
- From: gowthaman ramasamy <>
Re: criteria for best template....after comparison of many structures 2002/08/26
- From: Bozidar Yerkovich <>
Re: criteria for best template....after comparison of many structures 2002/08/26
- From: Andras Fiser <>
scoring models against X-ray data 2002/08/27
- From: Karsten Suhre <>
Re: scoring models against X-ray data 2002/08/27
- From: Andras Fiser <>
Re: scoring models against X-ray data 2002/08/27
- From: Karsten Suhre <>
Re: scoring models against X-ray data 2002/08/27
- From: Andras Fiser <>
Re: scoring models against X-ray data 2002/08/27
- From: Andras Fiser <>
System crash! 2002/08/28
- From: Shamshad Zarina <>
System crash! 2002/08/28
- From: Shamshad Zarina <>
Optimize in Modeller 6v2 2002/08/28
- From:
Re: Optimize in Modeller 6v2 2002/08/28
- From: Andras Fiser <>
Re: System crash! 2002/08/29
- From: Bozidar Yerkovich <>
2 problems - HETATM_IO and strange log (fwd) 2002/09/02
- From: Frank J A B <>
atom file 2002/09/02
- From: 조병관 <>
Re: atom file 2002/09/02
- From: "Peter C. Lai" <>
'sequence not read in' 2002/09/02
- From: 조병관 <>
Re: 'sequence not read in' 2002/09/03
- From: Andras Fiser <>
Re: 'sequence not read in' 2002/09/03
- From: Bozidar Yerkovich <>
Re: Modeller for Mac OS X 2002/09/03
- From: Bozidar Yerkovich <>
HETATM_IO and strange log 2002/09/03
- From: Frank J A B <>
# SET SELECTION_SEARCH = 'SPHERE_SEGMENT', SPHERE_RADIUS = 6 2002/09/06
- From: Bozidar Yerkovich <>
Re: # SET SELECTION_SEARCH = 'SPHERE_SEGMENT', SPHERE_RADIUS = 6 2002/09/06
- From: Bozidar Yerkovich <>
Bounced emails 2002/09/06
- From: Bozidar Yerkovich <>
embarassingly parallel modeller 2002/09/11
- From: "David E. Konerding" <>
stuck 2002/09/15
- From: "Jory L. Zmuda" <>
Re: embarassingly parallel modeller 2002/09/17
- From: Andras Fiser <>
B-factors in Modeller 2002/09/18
- From: "Dinesh Soares" <>
Gaps in the PDB file 2002/09/18
- From: "Fabio Passetti" <>
Re: Gaps in the PDB file 2002/09/18
- From: "Peter C. Lai" <>
use of Modeller in molecular replacement (X-ray cristallography) 2002/09/19
- From: Karsten Suhre <>
Bounced emails 2002/09/20
- From: Bozidar Yerkovich <>
SEQUENCE_SEARCH problems 2002/09/23
- From: Alex Brown <>
Re: SEQUENCE_SEARCH problems 2002/09/23
- From: Bozidar Yerkovich <>
Re: HETATM_IO and strange log 2002/09/23
- From: Andras Fiser <>
Re: SEQUENCE_SEARCH problems 2002/09/23
- From: Mensur Dlakic <>
RE: SEQUENCE_SEARCH problems 2002/09/23
- From: Roberto Sanchez <>
Problem with SEQUENCE_SEARCH 2002/09/23
- From: "Juan Palacios" <>
Re: SEQUENCE_SEARCH problems 2002/09/23
- From: "David E. Konerding" <>
HETATM_IO 2002/09/24
- From: Ralf Schmid <>
compare problems 2002/09/24
- From: Alex Brown <>
RE: HETATM_IO 2002/09/24
- From: "Roberto Sanchez" <>
Re: compare problems 2002/09/24
- From: Alex Brown <>
Problem with --error --- SEQUENCE_SEARCH -- 2002/09/24
- From: "Juan Palacios" <>
RE: HETATM_IO 2002/09/24
- From: Jonathan Esguerra <>
/pipe1/databases/pdb/uncompressed_files/pdb1hci.ent 2002/09/24
- From: Bozidar Yerkovich <>
Subject: models for MR 2002/09/24
- From: Bozidar Yerkovich <>
Fwd: SEQUENCE_SEARCH problems 2002/09/25
- From: Alex Brown <>
SEQUENCE_SEARCH Question 2002/09/25
- From: Alex Brown <>
problem with "Sequence_search".. After executing "sequence_search" for two hours does not deliver result 2002/09/25
- From: "Juan Palacios" <>
Re: Problem with SEQUENCE_SEARCH 2002/09/25
- From: Alex Brown <>
Re: SEQUENCE_SEARCH Question 2002/09/25
- From: Andras Fiser <>
align2d warnings 2002/09/26
- From: Alex Brown <>
TvLDH Example 2002/09/27
- From: Alex Brown <>
Problems with modeling chimera 2002/10/01
- From: "Andersen, Kim Vilbour (KVA)" <>
a bug? 2002/10/01
- From: "Kong Lesheng" <>
Multiple Template Alignment Problems - MAXRES 2002/10/02
- From: Alex Brown <>
Re: a bug? 2002/10/02
- From: Andras Fiser <>
Re: Multiple Template Alignment Problems - MAXRES 2002/10/02
- From: Bozidar Yerkovich <>
Re: Problems with modeling chimera 2002/10/02
- From: Andras Fiser <>
Re: a bug? 2002/10/02
- From: Andras Fiser <>
Re: Multiple Template Alignment Problems - MAXRES 2002/10/03
- From: Alex Brown <>
ProsaII and Procheck 2002/10/03
- From: Alex Brown <>
RE: ProsaII and Procheck 2002/10/03
- From: Roberto Sanchez <>
surface electrostatics and hydrogens 2002/10/03
- From: Douglas Kojetin <>
Re: surface electrostatics and hydrogens 2002/10/03
- From: Mensur Dlakic <>
SS prediction 2002/10/03
- From: Santiago Ramon <>
Basic Modeling Question 2002/10/04
- From: Alex Brown <>
RE: Basic Modeling Question 2002/10/04
- From: "michael hanlon (BITS)" <>
Re: Multiple Template Alignment Problems - MAXRES 2002/10/04
- From: Bozidar Yerkovich <>
No log file in Windows 2000 2002/10/07
- From: John Penniston <>
new user and domain movements 2002/10/08
- From:
Windows 2002/10/09
- From: John Penniston <>
Re: new user and domain movements 2002/10/09
- From: Andras Fiser <>
Renumbering residues 2002/10/10
- From: Jonathan Esguerra <>
Atom index out of range 2002/10/11
- From: Satyan Sharma <>
PDB format problem... 2002/10/12
- From: 유아림 <>
[no subject] 2002/10/13
- From: Santiago Ramon <>
problem with SET MD_LEVEL 2002/10/14
- From: Frank J A B <>
Re: problem with SET MD_LEVEL 2002/10/14
- From: Bozidar Yerkovich <>
problem with SET MD_LEVEL 2002/10/14
- From: Frank J A B <>
Re: problem with SET MD_LEVEL 2002/10/15
- From: Andras Fiser <>
Usage 2002/10/15
- From: "Lewis, John" <>
Problems reading in pdb template file 2002/10/16
- From: Ralph Elison <>
modeller usage 2002/10/17
- From: "Somanadh Babu" <>
Re: modeller usage 2002/10/17
- From: sasson iris <>
Question on 1fdx example 2002/10/17
- From: Richard Friedman <>
Problem to modeller 2002/10/17
- From: Juan Palacios <>
RE: Problem to modeller 2002/10/17
- From: "Roberto Sanchez" <>
Re: Question on 1fdx example 2002/10/18
- From: Andras Fiser <>
Re: Problem to modeller 2002/10/18
- From: sasson iris <>
Bug reported in previous message - Description and Workaround 2002/10/21
- From: Richard Friedman <>
Is this a bug? 2002/10/21
- From: Richard Friedman <>
Installation problems Windows XP 2002/10/21
- From: Simon P Gough <>
Re: Installation problems Windows XP 2002/10/21
- From: Mensur Dlakic <>
Redhat 8.0 Error 2002/10/22
- From: "Bradley J. S. C. Olson" <>
Re: Redhat 8.0 Error 2002/10/22
- From: Bozidar Yerkovich <>
Re: Redhat 8.0 Error 2002/10/22
- From: "Raghurama P. Hegde" <>
modeller 2002/10/22
- From: somanadh <>
Re: modeller 2002/10/23
- From: sasson iris <>
Fwd: 2002/10/23
- From: Santiago Ramon <>
Re: Redhat 8.0 Error 2002/10/23
- From: Bozidar Yerkovich <>
Re: MODELLER (Win XP) 2002/10/23
- From: Bozidar Yerkovich <>
RE: Redhat 8.0 Error 2002/10/23
- From: "Bradley J. S. C. Olson" <>
Re: MODELLER (Win XP) OK 2002/10/24
- From: Simon P Gough <>
Re: <no subject> 2002/10/25
- From: Bozidar Yerkovich <>
Re: Problem in MODELLER6v2 installation 2002/10/25
- From: Bozidar Yerkovich <>
Re: <no subject> 2002/10/25
- From: Bozidar Yerkovich <>
modeller installation on XP 2002/10/25
- From: "g e" <>
Any Modeller Users in Chicago? 2002/10/25
- From: "g e" <>
Lets Get Together 2002/10/25
- From: "Lewis, John" <>
Re: /etc/profile instead ~/.bashrc for linux 2002/10/25
- From: Bozidar Yerkovich <>
Modelling domains 2002/10/29
- From: Satyan Sharma <>
Re: Lets Get Together 2002/10/29
- From: Courtney Olmsted <>
[no subject] 2002/10/29
- From: "Andrej Sali" <>
Re: Modelling domains 2002/10/29
- From: Andras Fiser <>
Re: FW: Query 2002/10/29
- From: Andras Fiser <>
Re: FW: Query 2002/10/30
- From:
Putting in a heteroatom 2002/10/31
- From: John Penniston <>
Re: Usage 2002/11/01
- From: Bozidar Yerkovich <>
Re: problems 2002/11/01
- From: Bozidar Yerkovich <>
Loop Modeling 2002/11/06
- From: Alex Brown <>
Re: Loop Modeling 2002/11/06
- From: Andras Fiser <>
Re: Loop Modeling 2002/11/07
- From: Alex Brown <>
Re: Loop Modeling 2002/11/07
- From: Andras Fiser <>
error: Structure not read in 2002/11/09
- From: "Dr. Dan White" <>
Heteratom problems, message 1 2002/11/09
- From: John Penniston <>
Heteroatom problem, message 2 2002/11/09
- From: John Penniston <>
Re: Heteratom problems, message 1 2002/11/09
- From: Bozidar Yerkovich <>
Re: error: Structure not read in 2002/11/10
- From: "Raghurama P. Hegde" <>
Re: error: Structure not read in 2002/11/11
- From: "Dr. Dan White" <>
electrostatic potential 2002/11/12
- From: "Yang Xiaolin" <>
tetrameric protein 2002/11/13
- From: "bharat adkar" <>
Heteroatom problem solved 2002/11/13
- From: "John T. Penniston" <>
postdocs 2002/11/14
- From: Andras Fiser <>
Adding ligands to my MODEL 2002/11/15
- From: Troy Wymore <>
Bump checking with modeller 2002/11/27
- From: Frank J A B <>
restraining sec. structure elements 2002/11/29
- From: Frank J A B <>
Re: restraining sec. structure elements 2002/12/04
- From: Bozidar Yerkovich <>
low sequence identity 2002/12/05
- From: Margot Ernst <>
RE: low sequence identity 2002/12/05
- From: "Roberto Sanchez" <>
alignment help needed 2002/12/11
- From: HIDDEN
leaving gaps in non aligned regions 2002/12/12
- From: Gowthaman R <>
RE: leaving gaps in non aligned regions 2002/12/12
- From: Roberto Sanchez <>
RE: leaving gaps in non aligned regions 2002/12/12
- From: Gowthaman R <>
floating invalid 2002/12/16
- From: Marcos Bonfadini <>
error 648 with modeller 2002/12/17
- From: Cédric Bauvois <>
Re: error 648 with modeller 2002/12/17
- From: Bozidar Yerkovich <>
assign force field 2002/12/25
- From: "Yang Xiaolin" <>

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