MALIGN3D Top files which worked well using Modeler 4 are giving me this
error :
fndatmi_284E> Beginning atom index for a residue out of bounds: 0
0
recover____E> ERROR_STATUS >= STOP_ON_ERROR: 1 1
I am using the following script
# MALIGN3D
READ_ALIGNMENT FILE = 'pair.aa'
SET ATOM_FILES = '1.pdb' '2.pdb'
SET FIT_ATOMS = 'CA'
MALIGN3D GAP_PENALTIES_3D= 0 2.0, WRITE_FIT = on, WRITE_WHOLE_PDB = off
If anybody has seen this problem, please help.
Thank you
Michael Buck
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Michael Buck
NCSU Genetics
Phone (919)515-5759
Fax (919)515-3355
http://www4.ncsu.edu/~mjbuck
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