The installation looks good, the program runs. As a first attempt,
please try to run examples from the examples/ directory of the
distribution package and please look into the files for details.
1xnb is not found in your pir sequence file, and indeed you have 1fdx.
If you want to run a sequence search, you need to specify a few more
environment variables that will point Modeller to the respective
databses. For details please see the manual:
http://salilab.org/modeller/manual/node14.html
and comments in the example top files.
Andras
vuissoz Jean-Marc wrote:
>
> dear modeller team,
> Probably something is not installed correctly on my version of modeller6.1
> but I don't find what,
> here are the log files en top files with the error reported.
> best tanks
>
> vuissoz jean-marc
> >P1;1fdx
> sequence:1fdx:1 : :54 : :ferredoxin:Peptococcus aerogenes:
> >2.00:-1.00
> AYVINDSCIACGECPVNIIQGSIYAIDADSCIDCGSCASVCPVGAPNPED*
>
> SET SEARCH_RANDOMIZATIONS = 100
> SET FILE = 'prot.ali'
> SEQUENCE_SEARCH
> ALIGN_CODES = '1fdx', DATA_FILE = ON
>
> MODELLER 6v1, 17 Jan 2002
>
> PROTEIN STRUCTURE
> MODELLING BY SATISFACTION OF SPATIAL RESTRAINTS
>
> Copyright(c) 1989-2002 Andrej Sali
>
> All Rights Reserved
>
> Written by A. Sali
>
> with help from A. Fiser, R. Sanchez, M.A. Marti-Renom,
>
> B. Jerkovic, A. Badretdinov, F. Melo,
> J.P.
> Overington & E. Feyfant
> Rockefeller
> University, New York, USA
> Harvard University,
> Cambridge, USA
> Imperial Cancer Research Fund,
> London, UK
> Birkbeck College, University of London,
> London, UK
>
> Kind, OS, HostName, Kernel, Processor: 4, IRIX64 IRIS 6.5
> IP30
> Date and time of compilation : 01/25/2002 20:36:35
> Job
> starting time (YY/MM/DD HH:MM:SS): 2002/02/15 17:44:24.629
>
> read_se_367E>
> Sequence not found; code: P1;1xnb
> recover____E> ERROR_STATUS >=
> STOP_ON_ERROR: 1 1
>
> Dynamically allocated memory at
> finish [B,kB,MB]: 2306323 2252.269 2.199
> Starting time
> : 2002/02/15 17:44:24.629
> Closing time
> : 2002/02/15 17:44:33.146
> Total CPU time [seconds]
> : 0.00