I'm running v6 on ReDHat 7.2 on a PIII.
I tried the following script for a sequence search:
SET OUTPUT_CONTROL = 1 1 1 1 0
SET SEARCH_RANDOMIZATIONS = 20
SET SEARCH_CHAINS_LIST = '${MODINSTALL6v0}/modlib/CHAINS_3.0_40_XN.cod'
SEQUENCE_SEARCH FILE = './TvLDH.ali', ALIGN_CODES = 'TvLDH'
DATA_FILE = ON
but get the following error, the last bit of which seems to indicate that
1xnb cannot be found, and yet it's there alright:
TOP_________> 2 2 SET SEARCH_RANDOMIZATIONS = 20
TOP_________> 3 3 SET SEARCH_CHAINS_LIST =
'${MODINSTALL6v0}/modlib/CHAINS_; 3.0_40_XN.cod'
TOP_________> 4 4 SEQUENCE_SEARCH FILE = './TvLDH.ali', ALIGN_CODES =
'TvLD; H'
openf5__224_> Open 11 OLD SEQUENTIAL
${MODINSTALL6v0}/modlib/CHAINS_3.0_40_XN.cod
openf5__224_> Open 11 OLD SEQUENTIAL
${MODINSTALL6v0}/modlib/CHAINS_3.0_40_XN.cod
openf5__224_> Open 11 OLD SEQUENTIAL
{MODINSTALL6v0}/modlib//CHAINS_all.seq
read_se_367E> Sequence not found; code: P1;1xnb
recover____E> ERROR_STATUS >= STOP_ON_ERROR: 1 1
Any ideas?
Mike
Dr. Mike Hanlon
Molecular Biology Computing Support
BBSRC Bioscience IT Services
West Common
Harpenden
Herts AL5 2JE
Phone: 01582 714904
Email:
Web: http://www.molbiol.bbsrc.ac.uk