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new user




Dear All!

I/m a new user of modeller , before a time ago, i made teh download of
modeller 6v2 , and just now i installed in my computer , linux/redhat 6.2.

in instalation i make all thing complete give the key and the all
instalation it's ok!!

when i go ro run a some example from tutorial, if i run initial.top all
works but if i run compare.top i have a problems :

 
TOP_________>     5    5 COMPARE OUTPUT = 'LONG' 
 
pdbnam__217W> Filename for PDB code not found:  1fdx.B99990001
              Directories:  ./:../atom_files
              Extensions :   :.atm:.pdb:.ent:.crd
openf5__224_> Open       11  OLD  SEQUENTIAL  ./1fdx.atm
openf5__224_> Open       11  OLD  SEQUENTIAL  file-not-found
openf5__225E> File does not exist:  file-not-found
get_nal_378E> Error reading sequence from PDB file:        1
recover____E> ERROR_STATUS >= STOP_ON_ERROR:        1    

i know that mean they can't found the file , why? the file are there, more
question when i run a example from bin direcoty, they have a errors too:

assgn___544E> Variable name not recognized:  MAX_ITERATIONS_STORE
              Command line:  SET MAX_ITERATIONS_STORE = MAX_ITERATIONS
assgn___525E> Error in TOP variable assignment.
assgn___547E> Incorrect element type for variable:  ARGUMENTS
              Element, element type:  REFINE_HOT_ONLY        3
              Command line:  IF ARGUMENTS = REFINE_HOT_ONLY 1, OPERATION =
'NE',
 THEN    'GO_TO __BEGIN_MD'
assgn___525E> Error in TOP variable assignment.
assgn___544E> Variable name not recognized:  VIOL_REP_STORE
              Command line:  SET VIOL_REP_STORE  = VIOL_REPORT_CUT
assgn___525E> Error in TOP variable assignment.
assgn___547E> Incorrect element type for variable:  ARGUMENTS
              Element, element type:  RSTRS_REFINED        3
              Command line:  IF ARGUMENTS = RSTRS_REFINED 0, OPERATION =
'EQ', T
HEN    'SET VIOL_REPORT_CUT = 4 4 4 4 4 999 999 999 999 999 999 999 999
999 999 
999 999 4 4 4 999 999 999 999 999 999 999 999 999 999 999'
assgn___525E> Error in TOP variable assignment.


and more, some one can exaplind me why i didn't get a normal anwser?

i really dont want to run under by windows , i really dont have this type
of machine ;-) and don't want

best regads,

-miki roit