Dear All!
I/m a new user of modeller , before a time ago, i made teh download of
modeller 6v2 , and just now i installed in my computer , linux/redhat 6.2.
in instalation i make all thing complete give the key and the all
instalation it's ok!!
when i go ro run a some example from tutorial, if i run initial.top all
works but if i run compare.top i have a problems :
TOP_________> 5 5 COMPARE OUTPUT = 'LONG'
pdbnam__217W> Filename for PDB code not found: 1fdx.B99990001
Directories: ./:../atom_files
Extensions : :.atm:.pdb:.ent:.crd
openf5__224_> Open 11 OLD SEQUENTIAL ./1fdx.atm
openf5__224_> Open 11 OLD SEQUENTIAL file-not-found
openf5__225E> File does not exist: file-not-found
get_nal_378E> Error reading sequence from PDB file: 1
recover____E> ERROR_STATUS >= STOP_ON_ERROR: 1
i know that mean they can't found the file , why? the file are there, more
question when i run a example from bin direcoty, they have a errors too:
assgn___544E> Variable name not recognized: MAX_ITERATIONS_STORE
Command line: SET MAX_ITERATIONS_STORE = MAX_ITERATIONS
assgn___525E> Error in TOP variable assignment.
assgn___547E> Incorrect element type for variable: ARGUMENTS
Element, element type: REFINE_HOT_ONLY 3
Command line: IF ARGUMENTS = REFINE_HOT_ONLY 1, OPERATION =
'NE',
THEN 'GO_TO __BEGIN_MD'
assgn___525E> Error in TOP variable assignment.
assgn___544E> Variable name not recognized: VIOL_REP_STORE
Command line: SET VIOL_REP_STORE = VIOL_REPORT_CUT
assgn___525E> Error in TOP variable assignment.
assgn___547E> Incorrect element type for variable: ARGUMENTS
Element, element type: RSTRS_REFINED 3
Command line: IF ARGUMENTS = RSTRS_REFINED 0, OPERATION =
'EQ', T
HEN 'SET VIOL_REPORT_CUT = 4 4 4 4 4 999 999 999 999 999 999 999 999
999 999
999 999 4 4 4 999 999 999 999 999 999 999 999 999 999 999'
assgn___525E> Error in TOP variable assignment.
and more, some one can exaplind me why i didn't get a normal anwser?
i really dont want to run under by windows , i really dont have this type
of machine ;-) and don't want
best regads,
-miki roit