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I'm try to compare different structures found by a seqsearch.top script with a 
compare.top script based on the compare.top present in one of the tutorials, 
but I get an error that look like this:
pntdp___E> Increase MAXRES or gap penalities.
Wat does MAXRES do and how can I eventually increase it?
Thank you all
Dott. Alessandro Contini
Istituto di Chimica Organica, Facoltà di Farmacia
Università degli Studi di Milano
Via Venezian, 21 20133 Milano
Tel. +390250314480  Fax +390250314476