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Re: Multiple Template Alignment Problems - MAXRES
Hi.
Thanks for the reply. However, the error remains - MAXRES now needs to
be increased to 51 ! I have a feeling this could go on forever.
I did some work on this last night, and the following script worked:
SET OUTPUT_CONTROL = 1 1 1 1 1
READ_MODEL FILE = '1hms'
SEQUENCE_TO_ALI ATOM_FILES = '1hms', ALIGN_CODES = '1hms'
READ_MODEL FILE = '1lid'
SEQUENCE_TO_ALI ADD_SEQUENCE = on, ATOM_FILES = ATOM_FILES '1lid',
ALIGN_CODES = ALIGN_CODES '1lid'
MALIGN3D
SET ADD_SEQUENCE = on, ALIGN_BLOCK = NUMB_OF_SEQUENCES
READ_ALIGNMENT FILE = 'blbp.seq', ALIGN_CODES = ALIGN_CODES 'blbp'
ALIGN2D
WRITE_ALIGNMENT FILE = 'blbp-1hms-1fdqA.ali', ALIGNMENT_FORMAT = 'PIR'
WRITE_ALIGNMENT FILE = 'blbp-1hms-1fdqA.pap', ALIGNMENT_FORMAT = 'PAP'
I got some inspiration for this from the manual: the second example
script for ALIGN3D.
Cheers,
Alex.
On Wednesday, October 2, 2002, at 05:08 pm, Bozidar Yerkovich wrote:
In your top file add:
SET MAXRES = 50
Bozidar