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Renumbering residues



Hi,

This should be a very simple problem on renumbering
the residues but I couldn't make it work.

The WRITE_MODEL command did not initiate hence no
output file was produced.

I wonder why...? 

Thanks in advance for any help! 

here is the top file (modified from one of Andras
posts in 1998) :

SET OUTPUT_CONTROL = 1 1 1 1 1
READ_MODEL FILE = 'model.pdb'
RENAME_SEGMENTS RENUMBER_RESIDUES = 3
WRITE_MODEL FILE = 'renumbered_model.pdb'

(the model.pdb file was generated by Modeller and is
continuously numbered. )

here is the log:

TOP_________>     2    2 READ_MODEL FILE = 'model.pdb'

 
openf5__224_> Open       11  OLD  SEQUENTIAL 
model.pdb

Dynamically allocated memory at         amaxbnd
[B,kB,MB]:      4574383    4467.171     4.362
openf5__224_> Open       11  OLD  SEQUENTIAL 
model.pdb
rdatm___297_> Segments, residues, atoms:        1     
157     1150
rdatm___298_> Segment:        1     1     1     1150
TOP_________>     3    3 RENAME_SEGMENTS
RENUMBER_RESIDUES = 3 
 

Dynamically allocated memory at          finish
[B,kB,MB]:      4574383    4467.171     4.362




=====
Jonathan LS Esguerra
Structural Chemistry
Department of Medical Biochemistry
Gothenburg University, Sweden

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