Hi:
Hi to all the modeller users in the list!
Im new to modeller, and trying to build my first modeller derived model. I
already knew the template I want to use and the sequence to model.
When run my script I get the following error:
check_a_337E> Structure not read in: 1
recover____E> ERROR_STATUS >= STOP_ON_ERROR: 1 1
I assume the error is my definition of my set atoms file, the script Im
using goes like this:
SET ALNFILE = '01mod.ali' # alignment filename
SET KNOWNS = '1cx1' # codes of the templates
SET SEQUENCE = '1dnj' # code of the target
SET ATOM_FILES_DIRECTORY = './:../PDB:./atom_files' # directories for input
atom files
SET STARTING_MODEL= 1 # index of the first model
SET ENDING_MODEL = 2 # index of the last model
SET DEVIATION = 4.0 # have to be >0 if more than 1 model
SET RAND_SEED = -12312 # to have different models from another
TOP file
CALL ROUTINE = 'model' # do homology modelling
I have my pdb file in ./atoms_files (named 1cx1.pdb) and my alnfile and
sequence (01.mod.ali 1dnj.seq) in ./
>From the user manual I think my Atoms files directory is well defined,
however Im stuck...
There is some stupid/basic mistake Im overlooking?
Thanks in advance,
Luis Rosales