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New to Modeller...



Hi:

Hi to all the modeller users in the list!
Im new to modeller, and trying to build my first modeller derived model. I
already knew the template I want to use and the sequence to model.

When run my script I get the following error:

 check_a_337E> Structure not read in:        1
 recover____E> ERROR_STATUS >= STOP_ON_ERROR:        1       1

I assume the error is my definition of my set atoms file, the script Im
using goes like this:

 SET ALNFILE  = '01mod.ali'           # alignment filename
 SET KNOWNS   = '1cx1'                # codes of the templates
 SET SEQUENCE = '1dnj'                # code of the target
 SET ATOM_FILES_DIRECTORY = './:../PDB:./atom_files' # directories for input
atom files
 SET STARTING_MODEL= 1               # index of the first model
 SET ENDING_MODEL  = 2               # index of the last model
 SET DEVIATION     = 4.0             # have to be >0 if more than 1 model
 SET RAND_SEED     = -12312          # to have different models from another
TOP file
 CALL ROUTINE = 'model'              # do homology modelling


I have my pdb file in ./atoms_files (named 1cx1.pdb) and my alnfile and
sequence (01.mod.ali 1dnj.seq) in ./
>From the user manual I think my Atoms files directory is well defined,
however Im stuck...

There is some stupid/basic mistake Im overlooking?

Thanks in advance,


Luis Rosales