Andrej Sali,您好！
I want to caculate RMSD between one protein and many other protein structures. I hardly found a good RMSD programme by google. Could you help me give me a RMSD programme?
Shiyong
======= 2003-03-18 07:02:00 您在来信中写道：=======
>Possibly so.
>
>Andrej
>
>--
>Andrej Sali, Professor
>Departments of Biopharmaceutical Sciences and Pharmaceutical Chemistry, and
> California Institute for Quantitative Biomedical Research
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>
>
>> -----Original Message-----
>> From:
>> [">mailto:] On Behalf Of quentin kaas
>> Sent: Tuesday, March 18, 2003 7:00 AM
>> To:
>> Subject: Re: Array too small. Increase MPAIRS
>>
>>
>> I resolved my MPAIRS problem in using the top_heav.lib
>> topology library
>> instead of the top_allh.lib. As my model is quite big, the
>> hydrogens may be
>> too numerous to be handled by Modeller.
>> Thank you for your help.
>>
>> Quentin Kaas
>>
>> Le Lundi 17 Mars 2003 16:08, Andrej Sali a ?rit :
>> > Without seeing the input/output files, it probably indicates a
>> > difficult optimization problem that runs into many overlapping atom
>> > pairs. Can you improve the alignment?
>> >
>> > Andrej
>>
>>
>
>.
= = = = = = = = = = = = = = = = = = = =
致
礼！
Shiyong Liu
2003-03-19