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loop modeling



Hi all,
I whuld like your advice:
I build a model of a membrane protein and I want now to do "loop modeling"
to few extra cellular and intra-cellular loops.
 I wonder if this protocol of modeller is the right
choice since the model doesn't contain the membrane and I actually ignore
the influence of the polar heads.
    thank's
       Moshe Amity.




--------------------------------------
Moshe Amity 
Dep. of Chemistry
Bar Ilan University
Israel.