Subject: [modeller_usage] Problem in SEQUENCE_SEARCH
From: "Jorge Hernanez Fernandez" <>
Date: Tue, 14 Oct 2003 17:27:57 -0300
Dear Modellers!!:
Is any expertise in the use of the command SEQUENCE_SEARCH ?
All the time I use, the program stop trying to read the ?CHAINS_all.seq? file.
Is any kind of problem in the file? I will appreciate any help in this task.
Thanks in advance:
Jorge H.F.
Top file is:
INCLUDE
SET OUTPUT_CONTROL = 1 1 1 1 1
SET ATOM_FILES_DIRECTORY = '/export/db/pdb'
SET OUTPUT = 'SHORT' # 'LONG'
SET SIGNIF_CUTOFF = 8 3
SET SEARCH_RANDOMIZATIONS = 10
SET STOP_ON_ERROR = 2
SET FAST_SEARCH = ON
SET DATA_FILE = ON
CALL ROUTINE = 'sequence_srch', SEGFILE = 'DNApol.txt', SEQUENCE = 'DNApol'
The .log file all the time stop in the :
BLA, BLA, BLA,
Open 11 OLD SEQUENTIAL ${MODINSTALL6v2}/modlib//CHAINS_3.0_40_XN.cod
Dynamically allocated memory at amaxchn [B,kB,MB]: 2306323
2252.269 2.199
openf5__224_> Open 11 OLD SEQUENTIAL
${MODINSTALL6v2}/modlib//CHAINS_3.0_40_XN.cod
openf5__224_> Open 11 OLD SEQUENTIAL
${MODINSTALL6v2}/modlib//CHAINS_all.seq
--
== Dr. JORGE HERNANDEZ FERNANDEZ ==
===== Lab. de Biofisica e Bioquimica =====
===== CAT-CEPID - Instituto Butantan =====
====== Ave Vital Brasil, 1500 S.P. ======
==== S.B.I.- EMBRAPA - BioInformatica ====
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===== Barão Geraldo Campinas S.P. ======
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Cell: 0XX19-91336950
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