[Date Prev][Date Next][Thread Prev][Thread Next][Date Index][Thread Index]

[modeller_usage] Problem in SEQUENCE_SEARCH



Dear Modellers!!:

   Is any expertise in the use of the command SEQUENCE_SEARCH ?
All the time I use, the program stop trying to read the ?CHAINS_all.seq? file.
Is any kind of problem in the file? I will appreciate any help in this task.
Thanks in advance:

                      Jorge H.F.

Top file is:


INCLUDE
SET OUTPUT_CONTROL = 1 1 1 1 1
SET ATOM_FILES_DIRECTORY = '/export/db/pdb'          
SET OUTPUT = 'SHORT' # 'LONG'
SET SIGNIF_CUTOFF = 8 3
SET SEARCH_RANDOMIZATIONS = 10
SET STOP_ON_ERROR = 2
SET FAST_SEARCH = ON
SET DATA_FILE = ON
CALL ROUTINE = 'sequence_srch', SEGFILE = 'DNApol.txt', SEQUENCE = 'DNApol'





The .log file all the time stop in the :

BLA, BLA, BLA, 
Open       11  OLD  SEQUENTIAL  ${MODINSTALL6v2}/modlib//CHAINS_3.0_40_XN.cod
Dynamically allocated memory at         amaxchn [B,kB,MB]:      2306323   
2252.269     2.199
openf5__224_> Open       11  OLD SEQUENTIAL 
${MODINSTALL6v2}/modlib//CHAINS_3.0_40_XN.cod
openf5__224_> Open       11  OLD  SEQUENTIAL 
${MODINSTALL6v2}/modlib//CHAINS_all.seq


-- 
== Dr. JORGE HERNANDEZ FERNANDEZ ==

===== Lab. de Biofisica e Bioquimica =====
===== CAT-CEPID - Instituto Butantan =====
======  Ave Vital Brasil, 1500 S.P. ======

==== S.B.I.- EMBRAPA - BioInformatica ====
C.p. 6041 Cidade Universitária "Zeferino Vaz"
===== Barão Geraldo Campinas S.P. ======
=========== 13080-970 ==============

Tel:    0XX19-37895828
Cell:   0XX19-91336950


-- 
This message has been scanned for viruses and
dangerous content by MailScanner, and is
believed to be clean.