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[modeller_usage] Gaps in pdb file



Dear Modellers,

 

I'm relatively new to Modeller, and I have a question which I hope has an easy answer.  Whenever the pdb file for a solved structure has a gap in the residue numbers (so, for instance, it jumps from residue 300 to 315), I get an error saying that the number of residues in the alignment file and the pdb file are different.  How can I fix this problem?

 

Thanks!

 

Amanda MacFarlane

 

Amanda MacFarlane

Autoimmune Disease Group/Diabetes

Ottawa Health Research Institute

Lab N1 Box 221

501 Smyth Road

Ottawa ON K1S 5B7