Re: [modeller_usage] comparative modeling of protein
To:
Subject: Re: [modeller_usage] comparative modeling of protein
From: J B Procter <>
Date: Mon, 2 Feb 2004 10:11:14 +0100
Organization: Zentrum Fuer Bioinformatik
Reply-to:
On Sun, 1 Feb 2004 12:30:58 -0500
"Spero Manolatos" <> wrote:
> I have a 980 amino acid protein whose structure is unknown. I wish to
> learn if this protein belongs to a known family of protein of
> similar structure.
>
> I am not sure how to go about searching the modeler database to see if
> at least part of the sequence is similar to another sequence.
I suggest you search the protein sequence databases available at these
sites :
http://www.ebi.ac.uk/interpro/index.htmlhttp://pfam.wustl.edu/http://www.ncbi.nlm.nih.gov/BLAST/
hope it helps.