Re: [modeller_usage] comparative modeling of protein

[J B Procter <procter@zbh.uni-hamburg.de>]

On Sun, 1 Feb 2004 12:30:58 -0500
"Spero Manolatos" <sperom@verizon.net> wrote:

> I have a 980 amino acid protein whose structure is unknown. I wish to
> learn if this  protein belongs to a known family of  protein of
> similar structure.
>  
> I am not sure how to go about searching the modeler database to see if
> at least part of the sequence is similar to another sequence.

I suggest you search the protein sequence databases available at these
sites :

http://www.ebi.ac.uk/interpro/index.html
http://pfam.wustl.edu/
http://www.ncbi.nlm.nih.gov/BLAST/

hope it helps.