Modeller_Usage Mailing List (by date)

Thread Index

Re: [modeller_usage] help! 2004/01/05
- From: Modeller Caretaker <>
[modeller_usage] Fwd: FW: Modeller 2004/01/05
- From: Modeller Caretaker <>
[modeller_usage] loop modelling 2004/01/08
- From: nurul bahiyah <>
[modeller_usage] set restraints violations directory 2004/01/09
- From: Antoine Leimgruber <>
Re: [modeller_usage] set restraints violations directory 2004/01/09
- From: Modeller Caretaker <>
[modeller_usage] structure not read in 2004/01/10
- From: "Jaimin Shah" <>
Re: [modeller_usage] structure not read in 2004/01/12
- From: Modeller Caretaker <>
Re: [modeller_usage] structure not read in 2004/01/12
- From: "Jaimin Shah" <>
Re: [modeller_usage] structure not read in 2004/01/13
- From: J B Procter <>
[modeller_usage] a new hurdle-plz correct 2004/01/14
- From: "Jaimin Shah" <>
[modeller_usage] confused 2004/01/14
- From: "Jaimin Shah" <>
[modeller_usage] kindly suggest 2004/01/15
- From: "Jaimin Shah" <>
[modeller_usage] 2004/01/15
- From: nick jones <>
[modeller_usage] Can MODELLER use temperature B-factors? 2004/01/16
- From: Karsten Suhre <>
[modeller_usage] windows problem? 2004/01/16
- From: "Jaimin Shah" <>
[modeller_usage] Hetatm-entries in calculated model 2004/01/17
- From: "Volker Aufschild" <>
[modeller_usage] The number of the models 2004/01/17
- From: BinBin Liu <>
[modeller_usage] Inserting Cl atoms 2004/01/18
- From:
Re: [modeller_usage] The number of the models 2004/01/18
- From: Modeller Caretaker <>
Re: [modeller_usage] Hetatm-entries in calculated model 2004/01/18
- From: Modeller Caretaker <>
[modeller_usage] Re: the number of the models 2004/01/19
- From: BinBin Liu <>
[modeller_usage] Simple and Multiple Alignment 2004/01/19
- From: Hugo Brandão Uchôa <>
Re: [modeller_usage] The number of the models 2004/01/19
- From: "Thomas Duncan" <>
[modeller_usage] Ligand parameters 2004/01/19
- From: "Thomas Duncan" <>
[modeller_usage] when does MODELLER hang 2004/01/20
- From: "Jaimin Shah" <>
Re: [modeller_usage] when does MODELLER hang 2004/01/20
- From: Modeller Caretaker <>
Re: [modeller_usage] Re: the number of the models 2004/01/20
- From: Modeller Caretaker <>
Re: [modeller_usage] The number of the models 2004/01/20
- From: Modeller Caretaker <>
Re: [modeller_usage] Ligand parameters 2004/01/20
- From: Modeller Caretaker <>
[modeller_usage] 2004/01/20
- From: JIAN YIN <>
[modeller_usage] Re: when does MODELLER hang 2004/01/21
- From: Antoine Leimgruber <>
Re: [modeller_usage] Re: when does MODELLER hang 2004/01/21
- From:
Re: [modeller_usage] Re: when does MODELLER hang 2004/01/21
- From: Modeller Caretaker <>
Re: [modeller_usage] Re: when does MODELLER hang 2004/01/21
- From: Modeller Caretaker <>
[modeller_usage] 2004/01/22
- From: Michael Grabe <>
[modeller_usage] Multiple template usage 2004/01/26
- From: Dinesh Soares <>
[modeller_usage] Help wanted!!! 2004/01/27
- From: "Chupakhin - Чупахин" <>
Re: [modeller_usage] Help wanted!!! 2004/01/27
- From: Modeller Caretaker <>
[modeller_usage] Req. for Idea 2004/01/27
- From: Nataraj Balkrishnan <>
[modeller_usage] Loop refinment 2004/01/28
- From: "Chupakhin - Чупахин" <>
[modeller_usage] 2004/01/28
- From: "SLN Prasad Reddy" <>
[modeller_usage] Installing Modeller on Redhat linux 9 2004/01/30
- From: "Patil, Sachin" <>
[modeller_usage] 2004/01/30
- From: "SLN Prasad Reddy" <>
Re: [modeller_usage] Installing Modeller on Redhat linux 9 2004/01/30
- From: Modeller Caretaker <>
[modeller_usage] RE: 2004/01/31
- From: "Eswar Narayanan" <>
[modeller_usage] comparative modeling of protein 2004/02/01
- From: "Spero Manolatos" <>
Re: [modeller_usage] comparative modeling of protein 2004/02/02
- From: J B Procter <>
[modeller_usage] big_sequence 2004/02/02
- From: "Chupakhin - Чупахин" <>
Re: [modeller_usage] big_sequence 2004/02/02
- From: Modeller Caretaker <>
[modeller_usage] begginer 2004/02/03
- From: "Chupakhin - Чупахин" <>
[modeller_usage] RE: RE: 2004/02/05
- From: "Eswar Narayanan" <>
[modeller_usage] Modeller cant find .seq file 2004/02/06
- From: Esben Jannik Bjerrum <>
RE: [modeller_usage] Modeller cant find .seq file 2004/02/09
- From: Esben Jannik Bjerrum <>
[modeller_usage] How to get log file in windows 2004/02/09
- From: Nataraj Balkrishnan <>
Re: [modeller_usage] How to get log file in windows 2004/02/09
- From: Mensur Dlakic <>
[modeller_usage] divide__213E> Division by zero, during seq. search 2004/02/10
- From: Esben Jannik Bjerrum <>
Re: [modeller_usage] divide__213E> Division by zero, during seq. search 2004/02/10
- From: J B Procter <>
[modeller_usage] COMMAND line clarification 2004/02/10
- From: Nataraj Balkrishnan <>
Re: [modeller_usage] COMMAND line clarification 2004/02/10
- From: Shamshad Zarina <>
RE: [modeller_usage] COMMAND line clarification 2004/02/10
- From: "Luis Rosales" <>
Re: [modeller_usage] divide__213E> Division by zero, during seq. search 2004/02/11
- From: Esben Jannik Bjerrum <>
[modeller_usage] Request for a doubt clarification regarding modelling 2004/02/12
- From: anthony johnson <>
[modeller_usage] [Mailman] request letter for vlarification of a doubt regarding modelling 2004/02/13
- From: "anthony johnson" <>
[modeller_usage] Fortran Runtime Error 2004/02/15
- From: Zoee Gokhale <>
Re: [modeller_usage] Fortran Runtime Error 2004/02/15
- From: Modeller Caretaker <>
[modeller_usage] error in restraints calculation 2004/02/17
- From: David Giganti <>
[modeller_usage] docking 2004/02/17
- From: "Jaimin Shah" <>
Re: [modeller_usage] begginer 2004/02/17
- From: Modeller Caretaker <>
[modeller_usage] Second_line_of_the_alignment 2004/02/19
- From: "Chupakhin - Чупахин" <>
[modeller_usage] FAD / FeS topology ? 2004/02/19
- From: Guenter Fritz <>
[modeller_usage] modeling homotetramers 2004/02/19
- From: "Han Choe" <>
[modeller_usage] mutation 2004/02/20
- From: "Jaimin Shah" <>
[modeller_usage] Question about running modeller 2004/02/20
- From: En Yun <>
[modeller_usage] unrealistic B-factor 0.00 2004/02/20
- From: "Jaimin Shah" <>
Re: [modeller_usage] modeling homotetramers 2004/02/20
- From: Oliver Hucke <>
[modeller_usage] How to correct Bumps 2004/02/21
- From: Nataraj Balkrishnan <>
[modeller_usage] mutation 2004/02/23
- From: "Jaimin Shah" <>
Re: [modeller_usage] Question about running modeller 2004/02/23
- From: Modeller Caretaker <>
[modeller_usage] <modeller> objective function?? 2004/02/24
- From: Stefanie Offermann <>
[modeller_usage] pdf-score 2004/02/25
- From:
[modeller_usage] can genetics link with mathematics 2004/02/26
- From: rathan kar <>
[modeller_usage] B-factor error is to be ignored in theoretical modelling ? 2004/02/26
- From: Nataraj Balkrishnan <>
[modeller_usage] Adding a ligand 2004/03/01
- From: Shamshad Zarina <>
[modeller_usage] reference 2004/03/01
- From: Manal Swairjo <>
[modeller_usage] Adding a ligand 2004/03/02
- From:
[modeller_usage] Virus warning, previous warning was a virus and did not originate from salilab.org 2004/03/02
- From: Ursula Pieper <>
[modeller_usage] modeling protein-DNA complex 2004/03/02
- From: Betty Shen <>
[modeller_usage] Request 2004/03/03
- From: ram kumar <>
[modeller_usage] Reply to ram 2004/03/03
- From: Nataraj Balkrishnan <>
Re: [modeller_usage] Request 2004/03/04
- From: Stefanie Offermann <>
[modeller_usage] FORTRAN runtime errors...and more 2004/03/05
- From: "Matthias" <>
[modeller_usage] pyroglutamate 2004/03/14
- From: "Han Choe" <>
[modeller_usage] ModWeb question 2004/03/15
- From:
Re: [modeller_usage] pyroglutamate 2004/03/15
- From: Modeller Caretaker <>
Re: [modeller_usage] Adding a ligand 2004/03/15
- From: Modeller Caretaker <>
RE: [modeller_usage] ModWeb question 2004/03/15
- From: "Eswar Narayanan" <>
[modeller_usage] Any thesis reg modeller project work 2004/03/15
- From: Nataraj Balkrishnan <>
[modeller_usage] Why should add ourself ligand in protein? 2004/03/16
- From: Nataraj Balkrishnan <>
Re: [modeller_usage] Any thesis reg modeller project work 2004/03/16
- From: Modeller Caretaker <>
Re: [modeller_usage] Adding a ligand 2004/03/17
- From: Modeller Caretaker <>
[modeller_usage] symmetrisation of models 2004/03/17
- From: Binbin Liu <>
[modeller_usage] Search sequence in modeller not responding...! 2004/03/18
- From: Nataraj Balkrishnan <>
Re: [modeller_usage] symmetrisation of models 2004/03/19
- From: J B Procter <>
[modeller_usage] problems with the MALIGN command 2004/03/19
- From: Stefanie Offermann <>
[modeller_usage] Atom index is out of bounds error 2004/03/20
- From: "Han Choe" <>
[modeller_usage] OBJECTIVE FUNCTION 2004/03/22
- From: "Matthias" <>
Re: [modeller_usage] Atom index is out of bounds error 2004/03/22
- From: Modeller Caretaker <>
Re: [modeller_usage] FORTRAN runtime errors...and more 2004/03/22
- From: Modeller Caretaker <>
Re: [modeller_usage] OBJECTIVE FUNCTION 2004/03/22
- From: Modeller Caretaker <>
[modeller_usage] Number problem 2004/03/23
- From: hemant kushwaha <>
[modeller_usage] side-chain torsion angles 2004/03/24
- From: Binbin Liu <>
Re: [modeller_usage] side-chain torsion angles 2004/03/24
- From: Modeller Caretaker <>
Re: [modeller_usage] Number problem 2004/03/24
- From: Oliver Hucke <>
Re: [modeller_usage] side-chain torsion angles 2004/03/25
- From: J B Procter <>
Re: [modeller_usage] OBJECTIVE FUNCTION 2004/03/26
- From: Mickael Krzeminski <>
Re: [modeller_usage] side-chain torsion angles 2004/03/26
- From: Mickael Krzeminski <>
Re: [modeller_usage] side-chain torsion angles 2004/03/26
- From: "Eric Feyfant" <>
[modeller_usage] modeller errors 2004/03/27
- From: kambhampati anjaneyulu <>
[modeller_usage] The selection of models 2004/03/28
- From: Binbin Liu <>
Re: [modeller_usage] modeller errors 2004/03/28
- From: Modeller Caretaker <>
RE: [modeller_usage] The selection of models 2004/03/28
- From: "Eswar Narayanan" <>
[modeller_usage] Can any get Z-score for my target sequence in PROSAII? 2004/03/28
- From: Nataraj Balkrishnan <>
Re: [modeller_usage] The selection of models 2004/03/29
- From: J B Procter <>
Re: [modeller_usage] The selection of models 2004/03/29
- From: Liu Shiyong <>
[modeller_usage] Adding ligand in protein will solve sidechain confromatin problem? 2004/03/29
- From: Nataraj Balkrishnan <>
Re: [modeller_usage] Adding ligand in protein will solve sidechainconfromatin problem? 2004/03/29
- From: "Eric Feyfant" <>
Re: [modeller_usage] Can any get Z-score for my target sequence in PROSAII? 2004/03/29
- From: Daniel Rigden <>
Re: [modeller_usage] Adding ligand in protein will solve sidechain confromatin problem? 2004/03/30
- From: J B Procter <>
Re: [modeller_usage] OBJECTIVE FUNCTION 2004/03/30
- From: "Matthias" <>
[modeller_usage] problem reading alignment file 2004/03/30
- From: "Clemens Steegborn" <>
[modeller_usage] Count problem 2004/03/30
- From: hemant kushwaha <>
RE: [modeller_usage] problem reading alignment file 2004/03/31
- From: "Schweikardt, Thorsten" <>
Re: [modeller_usage] problem reading alignment file 2004/03/31
- From: "Eric Feyfant" <>
[modeller_usage] Re: modeller_usage Digest, Vol 3, Issue 36 2004/03/31
- From: Azat Badretdinov <>
[modeller_usage] Modelling of one conformation, docking another being a problem? 2004/04/01
- From: Nataraj Balkrishnan <>
[modeller_usage] Modeller crashed due to heavy load.....! 2004/04/02
- From: Nataraj Balkrishnan <>
Re: [modeller_usage] Modeller crashed due to heavy load.....! 2004/04/02
- From: Modeller Caretaker <>
[modeller_usage] residue problem 2004/04/07
- From: hemant kushwaha <>
Re: [modeller_usage] residue problem 2004/04/07
- From: "Eric Feyfant" <>
[modeller_usage] karthik. 2004/04/10
- From: kambhampati anjaneyulu <>
[modeller_usage] Regarding adding ligands to protein... 2004/04/10
- From: Nataraj Balkrishnan <>
Re: [modeller_usage] karthik. 2004/04/11
- From: Nataraj Balkrishnan <>
[modeller_usage] How to extract the backbone conformation alone from template? 2004/04/11
- From: Nataraj Balkrishnan <>
[modeller_usage] Regarding Optimization output ........ 2004/04/11
- From: Nataraj Balkrishnan <>
[modeller_usage] How to get various conformar for a modelled protein? 2004/04/11
- From: Nataraj Balkrishnan <>
[modeller_usage] Re: FW: FAQ 2004/04/12
- From:
Re: [modeller_usage] Regarding adding ligands to protein... 2004/04/12
- From: Modeller Caretaker <>
[modeller_usage] dynamic restraints 2004/04/12
- From: "Thomas Duncan" <>
Re: [modeller_usage] How to get various conformar for a modelled protein? 2004/04/13
- From: Karsten Suhre <>
[modeller_usage] regarding chain identifiers ... 2004/04/13
- From: gowthaman ramasamy <>
Re: [modeller_usage] How to get various conformar for a modelled protein? 2004/04/13
- From: "Luis Rosales" <>
Re: [modeller_usage] dynamic restraints 2004/04/13
- From: Modeller Caretaker <>
Re: [modeller_usage] How to get various conformar for a modelled protein? 2004/04/14
- From: Karsten Suhre <>
[modeller_usage] problem with using chain identifiers ... 2004/04/14
- From: gowthaman ramasamy <>
[modeller_usage] PDB Database updates 2004/04/14
- From: Nicole Scherer <>
[modeller_usage] (no subject) 2004/04/14
- From: "jeanney.f"<>
Re: [modeller_usage] PDB Database updates 2004/04/14
- From: Bozidar Yerkovich <>
Re: [modeller_usage] PDB Database updates 2004/04/15
- From: Karsten Suhre <>
[modeller_usage] Fwd: problem reading alignment file 2004/04/16
- From: "Clemens Steegborn" <>
[modeller_usage] alignment seq not found in pdb 2004/04/17
- From: IPSITA ACHARYA <>
[modeller_usage] Superposition of many model segments 2004/04/19
- From: Toni Hermoso Pulido <>
[modeller_usage] model a tetramer with Modeller 2004/04/20
- From:
[modeller_usage] some questions.. 2004/04/20
- From: "Your Name" <>
Re: [modeller_usage] regarding chain identifiers ... 2004/04/21
- From: Modeller Caretaker <>
Re: [modeller_usage] alignment seq not found in pdb 2004/04/21
- From: Modeller Caretaker <>
[modeller_usage] B-factor column after Loop refinement in v6 2004/04/22
- From: "Bissan Al-Lazikani,(4627)" <>
[modeller_usage] possibility of usage of two force feild at a time for a model building 2004/04/22
- From: Nataraj Balkrishnan <>
Re: [modeller_usage] B-factor column after Loop refinement in v6 2004/04/22
- From: Modeller Caretaker <>
[modeller_usage] READ_MODEL error: MODEL atom not classified 2004/04/27
- From: Sascha Tayefeh <>
Re: [modeller_usage] READ_MODEL error: MODEL atom not classified 2004/04/28
- From: Modeller Caretaker <>
[modeller_usage] secondary structure display 2004/04/30
- From: gowthaman ramasamy <>
Re: [modeller_usage] secondary structure display 2004/04/30
- From: Nataraj Balkrishnan <>
[modeller_usage] help on using modeller 2004/05/02
- From: rathan kar <>
Re: [modeller_usage] help on using modeller 2004/05/02
- From: Nataraj Balkrishnan <>
[modeller_usage] modeller6v2 on apple macitosh G5 machine. 2004/05/02
- From: Wonsuhk Uhm <>
[modeller_usage] Re: modeller_usage Digest, Vol 3, Issue 51 2004/05/03
- From: rathan kar <>
Re: [modeller_usage] help on using modeller 2004/05/03
- From: rathan kar <>
Re: [modeller_usage] help on using modeller 2004/05/03
- From: Modeller Caretaker <>
Re: [modeller_usage] modeller6v2 on apple macitosh G5 machine. 2004/05/04
- From: Modeller Caretaker <>
[modeller_usage] Fwd: homology-based secondary structure modelling 2004/05/04
- From: Amanda Preston <>
[modeller_usage] loop refinement 2004/05/05
- From: Karsten Suhre <>
Re: [modeller_usage] loop refinement 2004/05/05
- From: Mensur Dlakic <>
Re: [modeller_usage] Fwd: homology-based secondary structure modelling 2004/05/05
- From: Karsten Suhre <>
[modeller_usage] alignment file! 2004/05/06
- From: Yue Yun <>
[modeller_usage] Help!! 2004/05/06
- From: "Chaitanya Reddy.A" <>
Re: [modeller_usage] Help!! 2004/05/07
- From: Nataraj Balkrishnan <>
Re: [modeller_usage] Help!! 2004/05/07
- From: Mensur Dlakic <>
Re: [modeller_usage] alignment file! 2004/05/07
- From: Darren Thompson <>
[modeller_usage] different results running mod6v2 on diff OS 2004/05/16
- From: nurul bahiyah <>
[modeller_usage] toppar files for Charmm and X-plor 2004/05/16
- From: "Han Choe" <>
[modeller_usage] objective function 2004/05/17
- From: Gianluca Croce <>
Re: [modeller_usage] different results running mod6v2 on diff OS 2004/05/17
- From: Modeller Caretaker <>
Re: [modeller_usage] objective function 2004/05/17
- From: Modeller Caretaker <>
[modeller_usage] Restricting to Strand 2004/06/07
- From: John Penniston <>
[modeller_usage] Question about Make_restraints 2004/06/08
- From: Alejandra Leo <>
Re: [modeller_usage] Question about Make_restraints 2004/06/08
- From: Mensur Dlakic <>
[modeller_usage] CHECK_ALIGNMENT accepts it, but ROUTINE = 'model' does not. 2004/06/08
- From: Javier Satulovsky <>
[modeller_usage] hello sir 2004/06/13
- From: "V Nadeem Ahmad" <>
[modeller_usage] using modeller under Xp 2004/06/17
- From: "Edoardo Saccenti" <>
[modeller_usage] Chimeric model 2004/06/17
- From: Benoit Charloteaux <>
Re: [modeller_usage] using modeller under Xp 2004/06/17
- From: Mensur Dlakic <>
Re: [modeller_usage] Chimeric model 2004/06/17
- From: Liu Shiyong <>
[modeller_usage] problem with structures 2004/06/21
- From: "Marcin Hus" <>
[modeller_usage] unsuscribe 2004/06/22
- From: En Yun <>
[modeller_usage] unsuscribe 2004/06/22
- From: Luca Mollica <>
[modeller_usage] Energy profile 2004/06/22
- From: "mturano" <>
[modeller_usage] Optimization/Refinement of Models 2004/06/22
- From: Cvetan Stojkoski <>
[modeller_usage] some food for thought... 2004/06/23
- From: "Himanshu Grover" <>
Re: [modeller_usage] some food for thought... 2004/06/23
- From: Cvetan Stojkoski <>
[modeller_usage] too slow... 2004/06/24
- From: "noha lim" <>
Re: [modeller_usage] too slow... 2004/06/24
- From: Modeller Caretaker <>
[modeller_usage] Two templates 2004/06/25
- From: "Han Choe" <>
[modeller_usage] Nucleic Acids and modeller 2004/06/25
- From: "Luis Rosales" <>
[modeller_usage] modelling proteins with multiple chains... 2004/06/28
- From: "Himanshu Grover" <>
[modeller_usage] optimization problem... 2004/06/30
- From: "Himanshu Grover" <>
Re: [modeller_usage] optimization problem... 2004/06/30
- From: "Eric Feyfant" <>
[modeller_usage] Problem with PDB file 2004/06/30
- From: Lucas Bleicher <>
Re: [modeller_usage] Problem with PDB file 2004/06/30
- From: J B Procter <>
[modeller_usage] 2quest.: howto add restraints & rand_seed 2004/07/01
- From: Sascha Tayefeh <>
[modeller_usage] bbs suggestion 2004/07/01
- From: zjnjuct <>
Re: [modeller_usage] 2quest.: howto add restraints & rand_seed 2004/07/02
- From: Karsten Suhre <>
Re: [modeller_usage] bbs suggestion 2004/07/04
- From: Modeller Caretaker <>
Re: [modeller_usage] problem with structures 2004/07/04
- From: Modeller Caretaker <>
Re: [modeller_usage] Nucleic Acids and modeller 2004/07/04
- From: Modeller Caretaker <>
[modeller_usage] modeller as an optimizer, not as a modeller?? 2004/07/05
- From: "Himanshu Grover" <>
[modeller_usage] Special distance restraints weighting 2004/07/06
- From: "Schweikardt, Thorsten" <>
[modeller_usage] Help on align.top 2004/07/06
- From: Liu Shiyong <>
[modeller_usage] Nucleic Acids and modeller (cont...) 2004/07/06
- From: "Luis Rosales" <>
[modeller_usage] pseudo-atom usage? 2004/07/12
- From: Daniel Rigden <>
[modeller_usage] modeller problem 2004/07/13
- From: shantanu gautam <>
[modeller_usage] loop modelling with secondary structure 2004/07/14
- From: "John Simms" <>
[modeller_usage] beta strand restriction 2004/07/14
- From: "John Simms" <>
[modeller_usage] distance-dependent dielectric const.?? 2004/07/14
- From: "Himanshu Grover" <>
[Fwd: [modeller_usage] beta strand restriction] 2004/07/14
- From: John Penniston <>
Re: [modeller_usage] modeller problem 2004/07/14
- From: Modeller Caretaker <>
Re: [Fwd: [modeller_usage] beta strand restriction] 2004/07/14
- From: Modeller Caretaker <>
Re: [modeller_usage] modeller as an optimizer, not as a modeller?? 2004/07/14
- From: Modeller Caretaker <>
Re: [modeller_usage] distance-dependent dielectric const.?? 2004/07/14
- From: Modeller Caretaker <>
[modeller_usage] announcing normal mode analysis web server ElNemo 2004/07/15
- From: Karsten Suhre <>
[modeller_usage] soaking in aqueous medium... 2004/07/15
- From: "Himanshu Grover" <>
Re: [modeller_usage] modeller problem 2004/07/15
- From: Modeller Caretaker <>
[modeller_usage] (no subject) 2004/07/16
- From: karl schweighofer <>
[modeller_usage] MODELLER file archive 2004/07/16
- From: Modeller Caretaker <>
Re: [modeller_usage] pseudo-atom usage? 2004/07/16
- From: Modeller Caretaker <>
Re: [modeller_usage] (no subject) 2004/07/16
- From: Modeller Caretaker <>
[modeller_usage] Restraints Problem 2004/07/16
- From: "akshay17" <>
Re: [modeller_usage] Restraints Problem 2004/07/16
- From: Modeller Caretaker <>
[modeller_usage] Error: Array too small. Increase MAXBND 2004/07/16
- From: K S Doctor <>
[modeller_usage] loop positioning 2004/07/17
- From: "John Simms" <>
[modeller_usage] RMS and DRMS functions of COMPARE 2004/07/19
- From: Binbin Liu <>
[modeller_usage] RMS and DRMS functions of COMPARE again 2004/07/19
- From: Binbin Liu <>
Re: [modeller_usage] Restraints Problem 2004/07/19
- From: "akshay17" <>
[modeller_usage] core dumped when reading my restraint file 2004/07/20
- From: daniele bemporad <>
Re: [modeller_usage] Restraints Problem 2004/07/20
- From: Modeller Caretaker <>
Re: [modeller_usage] core dumped when reading my restraint file 2004/07/20
- From: Modeller Caretaker <>
Re: [modeller_usage] core dumped when reading my restraint file 2004/07/21
- From: daniele bemporad <>
Re: [modeller_usage] Restraints Problem 2004/07/21
- From: "akshay17" <>
Re: [modeller_usage] Restraints Problem 2004/07/21
- From: Modeller Caretaker <>
Re: [modeller_usage] core dumped when reading my restraint file 2004/07/21
- From: Modeller Caretaker <>
[modeller_usage] error STDEV < 0 (no lig in second template) 2004/07/22
- From: Jacques Zylberg <>
[modeller_usage] Array overflow error? 2004/07/22
- From: Evans Adolfo Tapia <>
[modeller_usage] randomize...why do it ?? 2004/07/22
- From: "Himanshu Grover" <>
Re: [modeller_usage] Array overflow error? 2004/07/22
- From: Modeller Caretaker <>
[modeller_usage] Installation prob on linux 2004/07/22
- From: Joel Tyndall <>
[modeller_usage] modeling mutations 2004/07/23
- From: "Miguel Relloso-Cereceda" <>
Re: [modeller_usage] Restraints Problem 2004/07/23
- From: Modeller Caretaker <>
Re: [modeller_usage] modeling mutations 2004/07/26
- From: Mickael Krzeminski <>
[modeller_usage] Some Doubts 2004/07/27
- From: Elton Jose Rosas de Vasconcelos <>
[modeller_usage] Dimer modelling with metals 2004/07/27
- From: "V Nadeem Ahmad" <>
RE: [modeller_usage] Some Doubts 2004/07/28
- From: "Schweikardt, Thorsten" <>
[modeller_usage] More Doubts. 2004/07/28
- From: Elton Jose Rosas de Vasconcelos <>
RE: [modeller_usage] More Doubts - missing aminoacids in template 2004/07/29
- From: "Schweikardt, Thorsten" <>
[modeller_usage] Loop refinement and symmetry 2004/07/29
- From: "David Piper" <>
RE: [modeller_usage] More Doubts 2004/07/30
- From: Cesar Avila <>
[modeller_usage] Does Modeller work on x86_64? 2004/07/30
- From: benne278 <>
Re: [modeller_usage] Does Modeller work on x86_64? 2004/08/02
- From: Tru Huynh <>
[modeller_usage] few minute problems 2004/08/11
- From: vivek sharma <>
[modeller_usage] very low sequence identity... 2004/08/21
- From: "limnoha" <>
[modeller_usage] problem 2004/08/23
- From: vivek sharma <>
[modeller_usage] Hetatm error 2004/08/23
- From: Shamshad Zarina <>
Re: [modeller_usage] problem 2004/08/23
- From: Modeller Caretaker <>
[modeller_usage] problem_2 2004/08/25
- From: vivek sharma <>
Re: [modeller_usage] problem_2 2004/08/25
- From: Modeller Caretaker <>
[modeller_usage] A word on beta (strand) restraints 2004/08/25
- From: Modeller Caretaker <>
[modeller_usage] MAXATM 2004/08/25
- From:
[modeller_usage] error on hetatm modelling 2004/08/26
- From: "V Nadeem Ahmad" <>
Re: [modeller_usage] error on hetatm modelling 2004/08/26
- From: Modeller Caretaker <>
Re: [modeller_usage] MAXATM 2004/08/26
- From: Modeller Caretaker <>
[modeller_usage] restraining dihedral angles 2004/08/29
- From: "Han Choe" <>
[modeller_usage] constraining backbone atoms using modeller? 2004/08/30
- From: "Diana C.Mustard" <>
[modeller_usage] few problems 2004/08/30
- From: vivek sharma <>
[modeller_usage] (no subject) 2004/08/30
- From: "Han Choe" <>
[modeller_usage] multi-chain modelling 2004/08/30
- From: "V.Nadeem Ahmad" <>
[modeller_usage] should there be entries of SSBOND after patch_ss_template in target model? 2004/08/30
- From:
Re: [modeller_usage] restraining dihedral angles 2004/08/30
- From: Modeller Caretaker <>
Re: [modeller_usage] constraining backbone atoms using modeller? 2004/08/31
- From: "Thomas Duncan" <>
[modeller_usage] Extracting alignment from already superposed structures 2004/09/02
- From: "Higueruelo Alicia (CAM)" <>
[modeller_usage] Error message: Array too small. Increase MAXSEG 2004/09/02
- From: "Nancy Yu" <>
[modeller_usage] problem! 2004/09/02
- From: vivek sharma <>
Re: [modeller_usage] Error message: Array too small. Increase MAXSEG 2004/09/02
- From: Modeller Caretaker <>
[modeller_usage] problem_again 2004/09/06
- From: vivek sharma <>
Re: [modeller_usage] problem_again 2004/09/10
- From: Modeller Caretaker <>
[modeller_usage] Announcing MODELLER 7v7 2004/09/16
- From: Modeller Caretaker <>
[modeller_usage] Problem with alignment file 2004/09/17
- From: 柳田　亮 <>
RE: [modeller_usage] Problem with alignment file 2004/09/17
- From: "Schweikardt, Thorsten" <>
Re: [modeller_usage] Problem with alignment file 2004/09/17
- From: Modeller Caretaker <>
[modeller_usage] Defining the centre of a helix and restraints 2004/09/20
- From: "John Simms" <>
[modeller_usage] Crash under 7v7 2004/09/20
- From: John Penniston <>
Re: [modeller_usage] Crash under 7v7 2004/09/20
- From: Modeller Caretaker <>
Re: [modeller_usage] Crash under 7v7 2004/09/21
- From: Modeller Caretaker <>
Re: [modeller_usage] Defining the centre of a helix and restraints 2004/09/22
- From: Modeller Caretaker <>
[modeller_usage] problem 2004/09/23
- From: vivek sharma <>
Re: [modeller_usage] problem 2004/09/23
- From: Modeller Caretaker <>
[modeller_usage] problem 2004/09/27
- From: vivek sharma <>
[modeller_usage] use NMR as template 2004/09/27
- From: remo <>
RE: [modeller_usage] use NMR as template 2004/09/27
- From: "Luis Rosales" <>
Re: [modeller_usage] problem 2004/09/29
- From: Modeller Caretaker <>
[modeller_usage] Modeller 7v7 AIX binary: now available 2004/10/01
- From: Modeller Caretaker <>
[modeller_usage] PDB updates for Modeller 2004/10/02
- From: Bruno Afonso <>
Re: [modeller_usage] PDB updates for Modeller 2004/10/02
- From: Eswar Narayanan <>
Re: [modeller_usage] PDB updates for Modeller 2004/10/03
- From: Bruno Afonso <>
Re: [modeller_usage] PDB updates for Modeller 2004/10/04
- From: J B Procter <>
[modeller_usage] Hard limits for size of sequence database 2004/10/04
- From: J B Procter <>
[modeller_usage] Markus Jaritz is out of the office. 2004/10/04
- From:
Re: [modeller_usage] PDB updates for Modeller 2004/10/04
- From: Eswar Narayanan <>
Re: [modeller_usage] PDB updates for Modeller 2004/10/04
- From: Eswar Narayanan <>
Re: [modeller_usage] Hard limits for size of sequence database 2004/10/06
- From: Modeller Caretaker <>
Re: [modeller_usage] Hard limits for size of sequence database 2004/10/07
- From: J B Procter <>
[modeller_usage] error on 'special_patches' routine for PATCH S-S bonds 2004/10/12
- From: "Dr. Daniel James White PhD" <>
[modeller_usage] bumps in model 2004/10/13
- From: Marc Gasser <>
[modeller_usage] Alignment file. 2004/10/13
- From:
Re: [modeller_usage] bumps in model 2004/10/13
- From: Marc Gasser <>
[modeller_usage] hetatms placed far away from the backbone 2004/10/13
- From: Michael Knoll <>
Re: [modeller_usage] Alignment file. 2004/10/13
- From: Eswar Narayanan <>
[modeller_usage] Modeller stopped with no specific error message 2004/10/18
- From: "서주현"<>
[modeller_usage] calling subroutine defsym 2004/10/19
- From: "amc" <>
RE: [modeller_usage] Modeller stopped with no specific error message 2004/10/19
- From: "amc" <>
[modeller_usage] where can I get file.crv file.cav by write_date 2004/10/20
- From: Shu-Qun Liu <>
RE: [modeller_usage] calling subroutine defsym 2004/10/20
- From: "amc" <>
Re: [modeller_usage] calling subroutine defsym 2004/10/20
- From: Modeller Caretaker <>
Re: [modeller_usage] Modeller stopped with no specific error message 2004/10/20
- From: Modeller Caretaker <>
Re: [modeller_usage] hetatms placed far away from the backbone 2004/10/20
- From: Modeller Caretaker <>
[modeller_usage] Re: where can I get file.crv file.cav by write_date 2004/10/21
- From: Modeller Caretaker <>
[modeller_usage] multiple alignment... 2004/10/22
- From: "limnoha" <>
Re: [modeller_usage] error on 'special_patches' routine for PATCH S-S bonds 2004/10/25
- From: Modeller Caretaker <>
Re: [modeller_usage] multiple alignment... 2004/10/25
- From: Modeller Caretaker <>
[modeller_usage] Error" Array too small. Increase MAXBND" 2004/10/26
- From: Youbin Tu <>
[modeller_usage] Merge twp alignment files 2004/10/26
- From: "HYUN CHUL KIM" <>
[modeller_usage] Protein with uracil 2004/10/27
- From: Michel Seigneuret <>
Re: [modeller_usage] Error" Array too small. Increase MAXBND" 2004/10/27
- From: Modeller Caretaker <>
Re: [modeller_usage] Protein with uracil 2004/10/27
- From: Modeller Caretaker <>
[modeller_usage] where to put the ligand? 2004/10/27
- From: Youbin Tu <>
[modeller_usage] Frustrating simple problem! 2004/10/31
- From: Joel Tyndall <>
RE: [modeller_usage] Frustrating simple problem! 2004/11/01
- From: Joel Tyndall <>
[modeller_usage] Unknown residue type,position,sequence...... 2004/11/02
- From: "서주현"<>
RE: [modeller_usage] Unknown residue type,position,sequence...... 2004/11/04
- From: "amc" <>
Re: [modeller_usage] Merge twp alignment files 2004/11/04
- From: Modeller Caretaker <>
[modeller_usage] basic example erros 2004/11/05
- From: "butheryin" <>
[modeller_usage] Helix Packing:Docking? 2004/11/05
- From: "David Piper" <>
Re: [modeller_usage] basic example erros 2004/11/05
- From: Modeller Caretaker <>
[modeller_usage] (senza oggetto) 2004/11/10
- From: "Matthias Negri" <>
[modeller_usage] Modeller vs Prime or MOE 2004/11/12
- From: "Stradella, Omar" <>
[modeller_usage] model a peptide 2004/11/13
- From: aseem mishra <>
Re: [modeller_usage] Modeller vs Prime or MOE 2004/11/13
- From: Ed Allen Smith <>
[modeller_usage] (no subject) 2004/11/14
- From: Praveen Madala <>
Re: [modeller_usage] model a peptide 2004/11/15
- From: Modeller Caretaker <>
[modeller_usage] Re: your mail 2004/11/15
- From: Modeller Caretaker <>
[modeller_usage] (no subject) 2004/11/15
- From:
Re: [modeller_usage] (no subject) 2004/11/15
- From: Modeller Caretaker <>
[modeller_usage] wrong topology for the ligand? 2004/11/15
- From: Youbin Tu <>
RE: [modeller_usage] wrong topology for the ligand? 2004/11/16
- From: "Higueruelo Alicia (CAM)" <>
Re: [modeller_usage] wrong topology for the ligand? 2004/11/16
- From: Modeller Caretaker <>
Re: [modeller_usage] wrong topology for the ligand? 2004/11/16
- From: Cvetan Stojkoski <>
[modeller_usage] Problems with Modeller 7v7 in windows XP 2004/11/16
- From: Alfonso Mendez <>
Re: RE: [modeller_usage] wrong topology for the ligand? 2004/11/17
- From: Youbin Tu <>
Re: RE: [modeller_usage] wrong topology for the ligand? 2004/11/17
- From: Modeller Caretaker <>
Re: RE: [modeller_usage] wrong topology for the ligand? 2004/11/17
- From: Cvetan Stojkoski <>
[modeller_usage] restraints problem, core dumped 2004/11/18
- From: "Praveen Madala" <>
Re: [modeller_usage] restraints problem, core dumped 2004/11/18
- From: Modeller Caretaker <>
[modeller_usage] (no subject) 2004/11/18
- From: Leonardo René Lareo <>
[modeller_usage] combining two proteins 2004/11/18
- From: "Han Choe" <>
Re: RE: [modeller_usage] wrong topology for the ligand? 2004/11/19
- From: Youbin Tu <>
[modeller_usage] upper and lower distance restraints 2004/11/19
- From: Youbin Tu <>
[modeller_usage] Modelling multiple chains 2004/11/22
- From:
[modeller_usage] problem 2004/11/23
- From: vivek sharma <>
[modeller_usage] How to preserve internal coordinates for identical residues 2004/11/29
- From: "James T Metz" <>
Re: [modeller_usage] upper and lower distance restraints 2004/11/29
- From: Modeller Caretaker <>
Re: [modeller_usage] Modelling multiple chains 2004/11/29
- From: Modeller Caretaker <>
Re: [modeller_usage] problem 2004/11/29
- From: Modeller Caretaker <>
Re: [modeller_usage] combining two proteins 2004/11/29
- From: Modeller Caretaker <>
[modeller_usage] multi domain protein help 2004/11/30
- From: Ranjit Kumar <>
Re: [modeller_usage] multi domain protein help 2004/12/01
- From: "Mr.Sridhar" <>
[modeller_usage] chain identifiers 2004/12/02
- From: "John Simms" <>
[modeller_usage] Extend the helix 2004/12/02
- From: "Narasimhamurthy." <>
[modeller_usage] alignment question 2004/12/07
- From: "Aline Rossi" <>
Re: [modeller_usage] alignment question 2004/12/07
- From: aline <>
[modeller_usage] Bad Model 2004/12/08
- From: A R <>
[modeller_usage] Script for superimposing generated models 2004/12/10
- From: Ivan Bosanac <>
[modeller_usage] How to constrain internal coordinates for identical residues 2004/12/10
- From: "James T Metz" <>
[modeller_usage] array problem 2004/12/16
- From: vivek sharma <>
Re: [modeller_usage] Bad Model 2004/12/16
- From: Joao Renato Carvalho Muniz <>
Re: [modeller_usage] array problem 2004/12/17
- From: Modeller Caretaker <>
Re: [modeller_usage] Script for superimposing generated models 2004/12/17
- From: Modeller Caretaker <>
[modeller_usage] "Precision problem" 2004/12/17
- From: Oliver Hucke <>
[modeller_usage] Regarding the running of modeller on SGI machine 2004/12/21
- From: Vohra S <>
Re: [modeller_usage] "Precision problem" 2004/12/21
- From: Modeller Caretaker <>
Re: [modeller_usage] Regarding the running of modeller on SGI machine 2004/12/21
- From: Modeller Caretaker <>
Re: [modeller_usage] Regarding the running of modeller on SGI machine 2004/12/21
- From: Eric Bennett <>
[modeller_usage] is it a bug? 2004/12/21
- From: WHONG Tienwynn <>
[modeller_usage] Problems with stereo-chemical fixing of Hydrogen atoms 2004/12/22
- From: Ravi Rathore <>
[modeller_usage] Superposition problem 2004/12/23
- From: Shamshad Zarina <>
Re: [modeller_usage] (no subject) 2004/12/28
- From: Anagha Joshi <>
Re: [modeller_usage] Problems with stereo-chemical fixing of Hydrogen atoms 2004/12/28
- From: Modeller Caretaker <>
Re: [modeller_usage] (no subject) 2004/12/28
- From: Modeller Caretaker <>
Re: [modeller_usage] Superposition problem 2004/12/29
- From: Modeller Caretaker <>

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