Modeller_Usage Mailing List (by thread)
- Re: [modeller_usage] help!,
Modeller Caretaker
- [modeller_usage] Fwd: FW: Modeller,
Modeller Caretaker
- [modeller_usage] loop modelling,
nurul bahiyah
- [modeller_usage] set restraints violations directory,
Antoine Leimgruber
- [modeller_usage] structure not read in,
Jaimin Shah
- [modeller_usage] a new hurdle-plz correct,
Jaimin Shah
- [modeller_usage] confused,
Jaimin Shah
- [modeller_usage] kindly suggest,
Jaimin Shah
- [modeller_usage],
nick jones
- [modeller_usage] Can MODELLER use temperature B-factors?,
Karsten Suhre
- [modeller_usage] windows problem?,
Jaimin Shah
- [modeller_usage] Hetatm-entries in calculated model,
Volker Aufschild
- [modeller_usage] The number of the models,
BinBin Liu
- [modeller_usage] Inserting Cl atoms,
rleite
- [modeller_usage] Re: the number of the models,
BinBin Liu
- [modeller_usage] Simple and Multiple Alignment,
Hugo Brandão Uchôa
- [modeller_usage] Ligand parameters,
Thomas Duncan
- [modeller_usage] when does MODELLER hang,
Jaimin Shah
- [modeller_usage] Re: when does MODELLER hang,
Antoine Leimgruber
- [modeller_usage] Multiple template usage,
Dinesh Soares
- [modeller_usage] Help wanted!!!,
"Chupakhin - Чупахин"
- [modeller_usage] Req. for Idea,
Nataraj Balkrishnan
- [modeller_usage] Loop refinment,
"Chupakhin - Чупахин"
- [modeller_usage] Installing Modeller on Redhat linux 9,
Patil, Sachin
- [modeller_usage] RE:,
Eswar Narayanan
- [modeller_usage] comparative modeling of protein,
Spero Manolatos
- [modeller_usage] big_sequence,
"Chupakhin - Чупахин"
- [modeller_usage] begginer,
"Chupakhin - Чупахин"
- [modeller_usage] RE: RE:,
Eswar Narayanan
- [modeller_usage] Modeller cant find .seq file,
Esben Jannik Bjerrum
- [modeller_usage] How to get log file in windows,
Nataraj Balkrishnan
- [modeller_usage] divide__213E> Division by zero, during seq. search,
Esben Jannik Bjerrum
- [modeller_usage] COMMAND line clarification,
Nataraj Balkrishnan
- Re: [modeller_usage] divide__213E> Division by zero, during seq. search,
Esben Jannik Bjerrum
- [modeller_usage] Request for a doubt clarification regarding modelling,
anthony johnson
- [modeller_usage] [Mailman] request letter for vlarification of a doubt regarding modelling,
anthony johnson
- [modeller_usage] Fortran Runtime Error,
Zoee Gokhale
- [modeller_usage] error in restraints calculation,
David Giganti
- [modeller_usage] docking,
Jaimin Shah
- [modeller_usage] Second_line_of_the_alignment,
"Chupakhin - Чупахин"
- [modeller_usage] FAD / FeS topology ?,
Guenter Fritz
- [modeller_usage] modeling homotetramers,
Han Choe
- [modeller_usage] mutation,
Jaimin Shah
[modeller_usage] Question about running modeller,
En Yun
[modeller_usage] unrealistic B-factor 0.00,
Jaimin Shah
[modeller_usage] How to correct Bumps,
Nataraj Balkrishnan
[modeller_usage] <modeller> objective function??,
Stefanie Offermann
[modeller_usage] pdf-score,
marc . gasser
[modeller_usage] can genetics link with mathematics,
rathan kar
[modeller_usage] B-factor error is to be ignored in theoretical modelling ?,
Nataraj Balkrishnan
[modeller_usage] Adding a ligand,
Shamshad Zarina
[modeller_usage] reference,
Manal Swairjo
[modeller_usage] Virus warning, previous warning was a virus and did not originate from salilab.org,
Ursula Pieper
[modeller_usage] modeling protein-DNA complex,
Betty Shen
[modeller_usage] Request,
ram kumar
[modeller_usage] Reply to ram,
Nataraj Balkrishnan
[modeller_usage] FORTRAN runtime errors...and more,
Matthias
[modeller_usage] pyroglutamate,
Han Choe
[modeller_usage] ModWeb question,
alarcon
[modeller_usage] Any thesis reg modeller project work,
Nataraj Balkrishnan
[modeller_usage] Why should add ourself ligand in protein?,
Nataraj Balkrishnan
[modeller_usage] symmetrisation of models,
Binbin Liu
[modeller_usage] Search sequence in modeller not responding...!,
Nataraj Balkrishnan
[modeller_usage] problems with the MALIGN command,
Stefanie Offermann
[modeller_usage] Atom index is out of bounds error,
Han Choe
[modeller_usage] OBJECTIVE FUNCTION,
Matthias
[modeller_usage] Number problem,
hemant kushwaha
[modeller_usage] side-chain torsion angles,
Binbin Liu
[modeller_usage] modeller errors,
kambhampati anjaneyulu
[modeller_usage] The selection of models,
Binbin Liu
[modeller_usage] Can any get Z-score for my target sequence in PROSAII?,
Nataraj Balkrishnan
[modeller_usage] Adding ligand in protein will solve sidechain confromatin problem?,
Nataraj Balkrishnan
Re: [modeller_usage] Adding ligand in protein will solve sidechainconfromatin problem?,
Eric Feyfant
[modeller_usage] problem reading alignment file,
Clemens Steegborn
[modeller_usage] Count problem,
hemant kushwaha
[modeller_usage] Re: modeller_usage Digest, Vol 3, Issue 36,
Azat Badretdinov
[modeller_usage] Modelling of one conformation, docking another being a problem?,
Nataraj Balkrishnan
[modeller_usage] Modeller crashed due to heavy load.....!,
Nataraj Balkrishnan
[modeller_usage] residue problem,
hemant kushwaha
[modeller_usage] karthik.,
kambhampati anjaneyulu
[modeller_usage] Regarding adding ligands to protein...,
Nataraj Balkrishnan
[modeller_usage] How to extract the backbone conformation alone from template?,
Nataraj Balkrishnan
[modeller_usage] Regarding Optimization output ........,
Nataraj Balkrishnan
[modeller_usage] How to get various conformar for a modelled protein?,
Nataraj Balkrishnan
[modeller_usage] Re: FW: FAQ,
phanivijayg
[modeller_usage] dynamic restraints,
Thomas Duncan
[modeller_usage] regarding chain identifiers ...,
gowthaman ramasamy
[modeller_usage] problem with using chain identifiers ...,
gowthaman ramasamy
[modeller_usage] PDB Database updates,
Nicole Scherer
[modeller_usage] (no subject),
jeanney.f
[modeller_usage] Fwd: problem reading alignment file,
Clemens Steegborn
[modeller_usage] alignment seq not found in pdb,
IPSITA ACHARYA
[modeller_usage] Superposition of many model segments,
Toni Hermoso Pulido
[modeller_usage] model a tetramer with Modeller,
lgan
[modeller_usage] some questions..,
Your Name
[modeller_usage] B-factor column after Loop refinement in v6,
Bissan Al-Lazikani,(4627)
[modeller_usage] possibility of usage of two force feild at a time for a model building,
Nataraj Balkrishnan
[modeller_usage] READ_MODEL error: MODEL atom not classified,
Sascha Tayefeh
[modeller_usage] secondary structure display,
gowthaman ramasamy
[modeller_usage] help on using modeller,
rathan kar
[modeller_usage] modeller6v2 on apple macitosh G5 machine.,
Wonsuhk Uhm
[modeller_usage] Re: modeller_usage Digest, Vol 3, Issue 51,
rathan kar
[modeller_usage] Fwd: homology-based secondary structure modelling,
Amanda Preston
[modeller_usage] loop refinement,
Karsten Suhre
[modeller_usage] alignment file!,
Yue Yun
[modeller_usage] Help!!,
Chaitanya Reddy.A
[modeller_usage] different results running mod6v2 on diff OS,
nurul bahiyah
[modeller_usage] toppar files for Charmm and X-plor,
Han Choe
[modeller_usage] Restricting to Strand,
John Penniston
[modeller_usage] Question about Make_restraints,
Alejandra Leo
[modeller_usage] CHECK_ALIGNMENT accepts it, but ROUTINE = 'model' does not.,
Javier Satulovsky
[modeller_usage] hello sir,
V Nadeem Ahmad
[modeller_usage] using modeller under Xp,
Edoardo Saccenti
[modeller_usage] Chimeric model,
Benoit Charloteaux
[modeller_usage] problem with structures,
Marcin Hus
[modeller_usage] unsuscribe,
En Yun
[modeller_usage] Energy profile,
mturano
[modeller_usage] Optimization/Refinement of Models,
Cvetan Stojkoski
[modeller_usage] some food for thought...,
Himanshu Grover
[modeller_usage] too slow...,
noha lim
[modeller_usage] Two templates,
Han Choe
[modeller_usage] Nucleic Acids and modeller,
Luis Rosales
[modeller_usage] modelling proteins with multiple chains...,
Himanshu Grover
[modeller_usage] optimization problem...,
Himanshu Grover
[modeller_usage] Problem with PDB file,
Lucas Bleicher
[modeller_usage] 2quest.: howto add restraints & rand_seed,
Sascha Tayefeh
[modeller_usage] modeller as an optimizer, not as a modeller??,
Himanshu Grover
[modeller_usage] Special distance restraints weighting,
Schweikardt, Thorsten
[modeller_usage] Help on align.top,
Liu Shiyong
[modeller_usage] pseudo-atom usage?,
Daniel Rigden
[modeller_usage] modeller problem,
shantanu gautam
[modeller_usage] loop modelling with secondary structure,
John Simms
[modeller_usage] beta strand restriction,
John Simms
[modeller_usage] distance-dependent dielectric const.??,
Himanshu Grover
[Fwd: [modeller_usage] beta strand restriction],
John Penniston
[modeller_usage] announcing normal mode analysis web server ElNemo,
Karsten Suhre
[modeller_usage] soaking in aqueous medium...,
Himanshu Grover
[modeller_usage] MODELLER file archive,
Modeller Caretaker
[modeller_usage] Restraints Problem,
akshay17
[modeller_usage] Error: Array too small. Increase MAXBND,
K S Doctor
[modeller_usage] loop positioning,
John Simms
[modeller_usage] RMS and DRMS functions of COMPARE,
Binbin Liu
[modeller_usage] RMS and DRMS functions of COMPARE again,
Binbin Liu
[modeller_usage] core dumped when reading my restraint file,
daniele bemporad
[modeller_usage] error STDEV < 0 (no lig in second template),
Jacques Zylberg
[modeller_usage] Array overflow error?,
Evans Adolfo Tapia
[modeller_usage] randomize...why do it ??,
Himanshu Grover
[modeller_usage] Installation prob on linux,
Joel Tyndall
[modeller_usage] modeling mutations,
Miguel Relloso-Cereceda
[modeller_usage] Some Doubts,
Elton Jose Rosas de Vasconcelos
[modeller_usage] Dimer modelling with metals,
V Nadeem Ahmad
[modeller_usage] More Doubts.,
Elton Jose Rosas de Vasconcelos
RE: [modeller_usage] More Doubts - missing aminoacids in template,
Schweikardt, Thorsten
[modeller_usage] Loop refinement and symmetry,
David Piper
RE: [modeller_usage] More Doubts,
Cesar Avila
[modeller_usage] Does Modeller work on x86_64?,
benne278
[modeller_usage] few minute problems,
vivek sharma
[modeller_usage] very low sequence identity...,
limnoha
[modeller_usage] problem,
vivek sharma
[modeller_usage] Hetatm error,
Shamshad Zarina
[modeller_usage] problem_2,
vivek sharma
[modeller_usage] A word on beta (strand) restraints,
Modeller Caretaker
[modeller_usage] MAXATM,
bcur001
[modeller_usage] error on hetatm modelling,
V Nadeem Ahmad
[modeller_usage] restraining dihedral angles,
Han Choe
[modeller_usage] constraining backbone atoms using modeller?,
Diana C.Mustard
[modeller_usage] few problems,
vivek sharma
[modeller_usage] multi-chain modelling,
V.Nadeem Ahmad
[modeller_usage] should there be entries of SSBOND after patch_ss_template in target model?,
dougyoung
Re: [modeller_usage] constraining backbone atoms using modeller?,
Thomas Duncan
[modeller_usage] Extracting alignment from already superposed structures,
Higueruelo Alicia (CAM)
[modeller_usage] Error message: Array too small. Increase MAXSEG,
Nancy Yu
[modeller_usage] problem!,
vivek sharma
[modeller_usage] problem_again,
vivek sharma
[modeller_usage] Announcing MODELLER 7v7,
Modeller Caretaker
[modeller_usage] Problem with alignment file,
柳田 亮
[modeller_usage] Defining the centre of a helix and restraints,
John Simms
[modeller_usage] Crash under 7v7,
John Penniston
[modeller_usage] use NMR as template,
remo
[modeller_usage] Modeller 7v7 AIX binary: now available,
Modeller Caretaker
[modeller_usage] PDB updates for Modeller,
Bruno Afonso
[modeller_usage] Markus Jaritz is out of the office.,
markus . jaritz
[modeller_usage] error on 'special_patches' routine for PATCH S-S bonds,
Dr. Daniel James White PhD
[modeller_usage] bumps in model,
Marc Gasser
[modeller_usage] Alignment file.,
bcur001
[modeller_usage] hetatms placed far away from the backbone,
Michael Knoll
[modeller_usage] Modeller stopped with no specific error message,
서주현
[modeller_usage] calling subroutine defsym,
amc
[modeller_usage] where can I get file.crv file.cav by write_date,
Shu-Qun Liu
[modeller_usage] multiple alignment...,
limnoha
[modeller_usage] Error" Array too small. Increase MAXBND",
Youbin Tu
[modeller_usage] Merge twp alignment files,
HYUN CHUL KIM
[modeller_usage] Protein with uracil,
Michel Seigneuret
[modeller_usage] where to put the ligand?,
Youbin Tu
[modeller_usage] Frustrating simple problem!,
Joel Tyndall
[modeller_usage] Unknown residue type,position,sequence......,
서주현
[modeller_usage] basic example erros,
butheryin
[modeller_usage] Helix Packing:Docking?,
David Piper
[modeller_usage] (senza oggetto),
Matthias Negri
[modeller_usage] Modeller vs Prime or MOE,
Stradella, Omar
[modeller_usage] model a peptide,
aseem mishra
[modeller_usage] wrong topology for the ligand?,
Youbin Tu
[modeller_usage] Problems with Modeller 7v7 in windows XP,
Alfonso Mendez
[modeller_usage] restraints problem, core dumped,
Praveen Madala
[modeller_usage] combining two proteins,
Han Choe
[modeller_usage] upper and lower distance restraints,
Youbin Tu
[modeller_usage] Modelling multiple chains,
gerald . quon
[modeller_usage] How to preserve internal coordinates for identical residues,
James T Metz
[modeller_usage] multi domain protein help,
Ranjit Kumar
[modeller_usage] chain identifiers,
John Simms
[modeller_usage] Extend the helix,
Narasimhamurthy.
[modeller_usage] alignment question,
Aline Rossi
[modeller_usage] Bad Model,
A R
[modeller_usage] Script for superimposing generated models,
Ivan Bosanac
[modeller_usage] How to constrain internal coordinates for identical residues,
James T Metz
[modeller_usage] array problem,
vivek sharma
[modeller_usage] "Precision problem",
Oliver Hucke
[modeller_usage] Regarding the running of modeller on SGI machine,
Vohra S
[modeller_usage] is it a bug?,
WHONG Tienwynn
[modeller_usage] Problems with stereo-chemical fixing of Hydrogen atoms,
Ravi Rathore
[modeller_usage] Superposition problem,
Shamshad Zarina
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