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Re: [modeller_usage] PDB updates for Modeller




Since I know this PDB is probably a good model and it won't come up in seq_search I was wondering how I could manually update CHAINS_all.seq or create my own sequence database.

The latest release of MODELLER (version 7v7, released last month) has a new command called SEQFILTER that can be used to cluster PDB sequences. You can use MAKE_CHAINS (also in the latest release) to collect the PDB chains prior to running SEQFILTER.


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Eswar Narayanan, Ph.D
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