[modeller_usage] Error" Array too small. Increase MAXBND"
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Subject: [modeller_usage] Error" Array too small. Increase MAXBND"
From: Youbin Tu <>
Date: Tue, 26 Oct 2004 14:32:47 -0400 (EDT)
Hi all:
Anyone has met such an error " Array too small. Increase MAXBND"?
I was trying to build a small ligand into the model, it seems that
sth wrong with the process of creating topology. I tried both
modeler6vs2 and modeler7v7, unfortunately they gave the same errors.
Here is the final part of the log file:
***********************************************************************
TOP_________> 135 91 CALL ROUTINE = 'create_topology'
TOP_________> 136 106 GENERATE_TOPOLOGY ADD_SEQUENCE = OFF
mkilst______> segment topology constructed from sequence and RTF:
segments residues atoms bonds angles dihedrals impropers:
1 513 4139 4201 0 0 1775
patch_______> segment topology patched using RTF: 1 ; MET ; NTER
segments residues atoms bonds angles dihedrals impropers:
1 513 4139 4201 5696 6784 1775
genseg______> segment topology constructed from sequence and RTF:
segments residues atoms bonds angles dihedrals impropers:
1 513 4139 4201 5696 6784 1775
getf____223E> Array too small. Increase MAXBND
current maximum, current need: 6948 6949
recover____E> ERROR_STATUS >= STOP_ON_ERROR: 1 1
Dynamically allocated memory at finish [B,kB,MB]: 8307049
8112.353 7.922
Starting time : 2004/10/26
14:20:01.859
Closing time : 2004/10/26
14:20:05.468
Total CPU time [seconds] : 3.28
*********************************************************************
Anyone has some ideas about it? Thanks.
youbin